miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32854 3' -48.9 NC_007383.1 + 64426 1.08 0.014818
Target:  5'- cCAACGACGACAGCGACGACAAUGAUAa -3'
miRNA:   3'- -GUUGCUGCUGUCGCUGCUGUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 45415 0.91 0.158641
Target:  5'- aCGACGACGACGaCGACGGCAGUGAUGa -3'
miRNA:   3'- -GUUGCUGCUGUcGCUGCUGUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 15578 0.87 0.241892
Target:  5'- aCAGCGACaACAGCGAUGACGAUGAa- -3'
miRNA:   3'- -GUUGCUGcUGUCGCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 23725 0.82 0.439523
Target:  5'- uCGGCGGCGGaGGUGGCGGCGAUGAUGu -3'
miRNA:   3'- -GUUGCUGCUgUCGCUGCUGUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 36955 0.82 0.458902
Target:  5'- aGACGAUgaaGGCGGCGGCGACAGUGGc- -3'
miRNA:   3'- gUUGCUG---CUGUCGCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 127113 0.78 0.648111
Target:  5'- aCGACGACGAUAGCGACaaaGAUGAa- -3'
miRNA:   3'- -GUUGCUGCUGUCGCUGcugUUACUau -5'
32854 3' -48.9 NC_007383.1 + 51853 0.76 0.784029
Target:  5'- uGACGACGACAaCGACGACugcGAUGu -3'
miRNA:   3'- gUUGCUGCUGUcGCUGCUGuuaCUAU- -5'
32854 3' -48.9 NC_007383.1 + 40303 0.75 0.793715
Target:  5'- aAACu-CGACGGCGGCGACGAaGAUAu -3'
miRNA:   3'- gUUGcuGCUGUCGCUGCUGUUaCUAU- -5'
32854 3' -48.9 NC_007383.1 + 1298 0.75 0.830718
Target:  5'- uGGCGGCGGUGGUGGCGGCGGUGGc- -3'
miRNA:   3'- gUUGCUGCUGUCGCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 19050 0.74 0.839485
Target:  5'- gCAACGACGACGGUauuaucuuCGACAAUGGc- -3'
miRNA:   3'- -GUUGCUGCUGUCGcu------GCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 36788 0.74 0.864481
Target:  5'- aCggUGGCGACAGCagugucGGCGGCAGUcGAUAu -3'
miRNA:   3'- -GuuGCUGCUGUCG------CUGCUGUUA-CUAU- -5'
32854 3' -48.9 NC_007383.1 + 80889 0.74 0.872352
Target:  5'- cCAGCaGGCGucgcucUAGCGGCGGCGGUGGUGg -3'
miRNA:   3'- -GUUG-CUGCu-----GUCGCUGCUGUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 55875 0.73 0.879981
Target:  5'- gCGGCGGCGACGGCuuaACGACAGUcucaagacGAUAa -3'
miRNA:   3'- -GUUGCUGCUGUCGc--UGCUGUUA--------CUAU- -5'
32854 3' -48.9 NC_007383.1 + 11449 0.73 0.887362
Target:  5'- aCAACGAUGACGaUGACGACAAaGAa- -3'
miRNA:   3'- -GUUGCUGCUGUcGCUGCUGUUaCUau -5'
32854 3' -48.9 NC_007383.1 + 38693 0.73 0.901361
Target:  5'- uGACGACGACGaCGAauauacCGACGAUGAUu -3'
miRNA:   3'- gUUGCUGCUGUcGCU------GCUGUUACUAu -5'
32854 3' -48.9 NC_007383.1 + 27066 0.72 0.92039
Target:  5'- gCAACGAaaaugguaaaaaUGGCAGCGAaGACGAUGAc- -3'
miRNA:   3'- -GUUGCU------------GCUGUCGCUgCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 39939 0.72 0.92039
Target:  5'- aCGAaGACGAgGGCGACGACAAg---- -3'
miRNA:   3'- -GUUgCUGCUgUCGCUGCUGUUacuau -5'
32854 3' -48.9 NC_007383.1 + 5511 0.72 0.922746
Target:  5'- uGACGACGACauaagugauaaaaguGGUGACGACGAUa--- -3'
miRNA:   3'- gUUGCUGCUG---------------UCGCUGCUGUUAcuau -5'
32854 3' -48.9 NC_007383.1 + 63126 0.72 0.926199
Target:  5'- gCGAUGACGAUAaCGACGGaGAUGAUGa -3'
miRNA:   3'- -GUUGCUGCUGUcGCUGCUgUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 32466 0.72 0.926199
Target:  5'- aCGAUGGCGACGcCGACGACAAg---- -3'
miRNA:   3'- -GUUGCUGCUGUcGCUGCUGUUacuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.