Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32854 | 3' | -48.9 | NC_007383.1 | + | 15578 | 0.87 | 0.241892 |
Target: 5'- aCAGCGACaACAGCGAUGACGAUGAa- -3' miRNA: 3'- -GUUGCUGcUGUCGCUGCUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 32593 | 0.69 | 0.984679 |
Target: 5'- aAGCGGCaGCAGaUGAUGAUAGUGAa- -3' miRNA: 3'- gUUGCUGcUGUC-GCUGCUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 6454 | 0.69 | 0.984679 |
Target: 5'- --cCGAUGAUAGCaGCGAUGAUGAc- -3' miRNA: 3'- guuGCUGCUGUCGcUGCUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 30281 | 0.67 | 0.993178 |
Target: 5'- aGACGACGACGcCGGCGAUAu----- -3' miRNA: 3'- gUUGCUGCUGUcGCUGCUGUuacuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 22398 | 0.67 | 0.994124 |
Target: 5'- uCGACGGCGgucagagcuccgGCGGUGACGACAu----- -3' miRNA: 3'- -GUUGCUGC------------UGUCGCUGCUGUuacuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 3754 | 0.66 | 0.997827 |
Target: 5'- uCAGCGACGGgcuCAGCGACGGg------- -3' miRNA: 3'- -GUUGCUGCU---GUCGCUGCUguuacuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 86681 | 0.66 | 0.998191 |
Target: 5'- gAACGAuUGGCGGCGACaGCAAUa--- -3' miRNA: 3'- gUUGCU-GCUGUCGCUGcUGUUAcuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 3826 | 0.66 | 0.998322 |
Target: 5'- uCAGCGACGGguucagcgucgggcuCAGCGAUGgguucaACGAUGGg- -3' miRNA: 3'- -GUUGCUGCU---------------GUCGCUGC------UGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 111038 | 0.66 | 0.998503 |
Target: 5'- uCGAUGACGAUGGUGcgaagcGCGcCAAUGAa- -3' miRNA: 3'- -GUUGCUGCUGUCGC------UGCuGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 16750 | 0.69 | 0.978173 |
Target: 5'- uCGACGAaacCGAUAGCGACGuCAAUa--- -3' miRNA: 3'- -GUUGCU---GCUGUCGCUGCuGUUAcuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 111791 | 0.7 | 0.969823 |
Target: 5'- --uCGugGACuauGuCGACGACGAUGAc- -3' miRNA: 3'- guuGCugCUGu--C-GCUGCUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 23725 | 0.82 | 0.439523 |
Target: 5'- uCGGCGGCGGaGGUGGCGGCGAUGAUGu -3' miRNA: 3'- -GUUGCUGCUgUCGCUGCUGUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 36955 | 0.82 | 0.458902 |
Target: 5'- aGACGAUgaaGGCGGCGGCGACAGUGGc- -3' miRNA: 3'- gUUGCUG---CUGUCGCUGCUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 1298 | 0.75 | 0.830718 |
Target: 5'- uGGCGGCGGUGGUGGCGGCGGUGGc- -3' miRNA: 3'- gUUGCUGCUGUCGCUGCUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 19050 | 0.74 | 0.839485 |
Target: 5'- gCAACGACGACGGUauuaucuuCGACAAUGGc- -3' miRNA: 3'- -GUUGCUGCUGUCGcu------GCUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 55875 | 0.73 | 0.879981 |
Target: 5'- gCGGCGGCGACGGCuuaACGACAGUcucaagacGAUAa -3' miRNA: 3'- -GUUGCUGCUGUCGc--UGCUGUUA--------CUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 32466 | 0.72 | 0.926199 |
Target: 5'- aCGAUGGCGACGcCGACGACAAg---- -3' miRNA: 3'- -GUUGCUGCUGUcGCUGCUGUUacuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 84456 | 0.7 | 0.959408 |
Target: 5'- aGACGuCGuCGGCGACGcCGAUGGa- -3' miRNA: 3'- gUUGCuGCuGUCGCUGCuGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 61601 | 0.7 | 0.969823 |
Target: 5'- uGACGACaauuGACAGCGAacACGAUGAg- -3' miRNA: 3'- gUUGCUG----CUGUCGCUgcUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 37004 | 0.66 | 0.998503 |
Target: 5'- --cCGGCGACAGCaauaucGACGGCAAc---- -3' miRNA: 3'- guuGCUGCUGUCG------CUGCUGUUacuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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