Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32854 | 3' | -48.9 | NC_007383.1 | + | 127113 | 0.78 | 0.648111 |
Target: 5'- aCGACGACGAUAGCGACaaaGAUGAa- -3' miRNA: 3'- -GUUGCUGCUGUCGCUGcugUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 110735 | 0.69 | 0.975606 |
Target: 5'- aCGACGAgGACGGCauCGACAuUGAUu -3' miRNA: 3'- -GUUGCUgCUGUCGcuGCUGUuACUAu -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 35399 | 0.69 | 0.980534 |
Target: 5'- aCAGCGGUGGCAGCGAuuCGAguAUGGa- -3' miRNA: 3'- -GUUGCUGCUGUCGCU--GCUguUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 37004 | 0.66 | 0.998503 |
Target: 5'- --cCGGCGACAGCaauaucGACGGCAAc---- -3' miRNA: 3'- guuGCUGCUGUCG------CUGCUGUUacuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 80889 | 0.74 | 0.872352 |
Target: 5'- cCAGCaGGCGucgcucUAGCGGCGGCGGUGGUGg -3' miRNA: 3'- -GUUG-CUGCu-----GUCGCUGCUGUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 11449 | 0.73 | 0.887362 |
Target: 5'- aCAACGAUGACGaUGACGACAAaGAa- -3' miRNA: 3'- -GUUGCUGCUGUcGCUGCUGUUaCUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 27066 | 0.72 | 0.92039 |
Target: 5'- gCAACGAaaaugguaaaaaUGGCAGCGAaGACGAUGAc- -3' miRNA: 3'- -GUUGCU------------GCUGUCGCUgCUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 39939 | 0.72 | 0.92039 |
Target: 5'- aCGAaGACGAgGGCGACGACAAg---- -3' miRNA: 3'- -GUUgCUGCUgUCGCUGCUGUUacuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 64426 | 1.08 | 0.014818 |
Target: 5'- cCAACGACGACAGCGACGACAAUGAUAa -3' miRNA: 3'- -GUUGCUGCUGUCGCUGCUGUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 24011 | 0.7 | 0.971949 |
Target: 5'- -cACGACGACGGCGACaugaaucaaaacgaGACGuuucGUGAc- -3' miRNA: 3'- guUGCUGCUGUCGCUG--------------CUGU----UACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 66322 | 0.72 | 0.931739 |
Target: 5'- aAACGACGACGaaGACGACGAgGAc- -3' miRNA: 3'- gUUGCUGCUGUcgCUGCUGUUaCUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 63126 | 0.72 | 0.926199 |
Target: 5'- gCGAUGACGAUAaCGACGGaGAUGAUGa -3' miRNA: 3'- -GUUGCUGCUGUcGCUGCUgUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 51853 | 0.76 | 0.784029 |
Target: 5'- uGACGACGACAaCGACGACugcGAUGu -3' miRNA: 3'- gUUGCUGCUGUcGCUGCUGuuaCUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 56561 | 0.7 | 0.963121 |
Target: 5'- gAGCGGCuGugAGuCGACGACcGUGAUu -3' miRNA: 3'- gUUGCUG-CugUC-GCUGCUGuUACUAu -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 40303 | 0.75 | 0.793715 |
Target: 5'- aAACu-CGACGGCGGCGACGAaGAUAu -3' miRNA: 3'- gUUGcuGCUGUCGCUGCUGUUaCUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 5511 | 0.72 | 0.922746 |
Target: 5'- uGACGACGACauaagugauaaaaguGGUGACGACGAUa--- -3' miRNA: 3'- gUUGCUGCUG---------------UCGCUGCUGUUAcuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 5587 | 0.7 | 0.966591 |
Target: 5'- aUAAUagUGACAGUgacGACGACAAUGAUAa -3' miRNA: 3'- -GUUGcuGCUGUCG---CUGCUGUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 63095 | 0.69 | 0.978173 |
Target: 5'- aGACGACGACAacgaaGACGAgggaaaCGAUGAUGa -3' miRNA: 3'- gUUGCUGCUGUcg---CUGCU------GUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 36788 | 0.74 | 0.864481 |
Target: 5'- aCggUGGCGACAGCagugucGGCGGCAGUcGAUAu -3' miRNA: 3'- -GuuGCUGCUGUCG------CUGCUGUUA-CUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 38693 | 0.73 | 0.901361 |
Target: 5'- uGACGACGACGaCGAauauacCGACGAUGAUu -3' miRNA: 3'- gUUGCUGCUGUcGCU------GCUGUUACUAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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