Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32854 | 3' | -48.9 | NC_007383.1 | + | 131548 | 0.66 | 0.997403 |
Target: 5'- gAGCGuCGaaacGCGGCGGCGACAAa---- -3' miRNA: 3'- gUUGCuGC----UGUCGCUGCUGUUacuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 127113 | 0.78 | 0.648111 |
Target: 5'- aCGACGACGAUAGCGACaaaGAUGAa- -3' miRNA: 3'- -GUUGCUGCUGUCGCUGcugUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 117120 | 0.67 | 0.9957 |
Target: 5'- --cCGACGACcaaAGCGACGAaggagGAUGu -3' miRNA: 3'- guuGCUGCUG---UCGCUGCUguua-CUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 111791 | 0.7 | 0.969823 |
Target: 5'- --uCGugGACuauGuCGACGACGAUGAc- -3' miRNA: 3'- guuGCugCUGu--C-GCUGCUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 111038 | 0.66 | 0.998503 |
Target: 5'- uCGAUGACGAUGGUGcgaagcGCGcCAAUGAa- -3' miRNA: 3'- -GUUGCUGCUGUCGC------UGCuGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 110735 | 0.69 | 0.975606 |
Target: 5'- aCGACGAgGACGGCauCGACAuUGAUu -3' miRNA: 3'- -GUUGCUgCUGUCGcuGCUGUuACUAu -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 86681 | 0.66 | 0.998191 |
Target: 5'- gAACGAuUGGCGGCGACaGCAAUa--- -3' miRNA: 3'- gUUGCU-GCUGUCGCUGcUGUUAcuau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 84456 | 0.7 | 0.959408 |
Target: 5'- aGACGuCGuCGGCGACGcCGAUGGa- -3' miRNA: 3'- gUUGCuGCuGUCGCUGCuGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 82034 | 0.68 | 0.989592 |
Target: 5'- gAGCGACGACcGCaccGACGACGGcGAc- -3' miRNA: 3'- gUUGCUGCUGuCG---CUGCUGUUaCUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 80889 | 0.74 | 0.872352 |
Target: 5'- cCAGCaGGCGucgcucUAGCGGCGGCGGUGGUGg -3' miRNA: 3'- -GUUG-CUGCu-----GUCGCUGCUGUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 66322 | 0.72 | 0.931739 |
Target: 5'- aAACGACGACGaaGACGACGAgGAc- -3' miRNA: 3'- gUUGCUGCUGUcgCUGCUGUUaCUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 64426 | 1.08 | 0.014818 |
Target: 5'- cCAACGACGACAGCGACGACAAUGAUAa -3' miRNA: 3'- -GUUGCUGCUGUCGCUGCUGUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 63126 | 0.72 | 0.926199 |
Target: 5'- gCGAUGACGAUAaCGACGGaGAUGAUGa -3' miRNA: 3'- -GUUGCUGCUGUcGCUGCUgUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 63095 | 0.69 | 0.978173 |
Target: 5'- aGACGACGACAacgaaGACGAgggaaaCGAUGAUGa -3' miRNA: 3'- gUUGCUGCUGUcg---CUGCU------GUUACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 61601 | 0.7 | 0.969823 |
Target: 5'- uGACGACaauuGACAGCGAacACGAUGAg- -3' miRNA: 3'- gUUGCUG----CUGUCGCUgcUGUUACUau -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 56561 | 0.7 | 0.963121 |
Target: 5'- gAGCGGCuGugAGuCGACGACcGUGAUu -3' miRNA: 3'- gUUGCUG-CugUC-GCUGCUGuUACUAu -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 55875 | 0.73 | 0.879981 |
Target: 5'- gCGGCGGCGACGGCuuaACGACAGUcucaagacGAUAa -3' miRNA: 3'- -GUUGCUGCUGUCGc--UGCUGUUA--------CUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 52478 | 0.66 | 0.997403 |
Target: 5'- aAACGACGGCGGUGcgaguCGAgAauucAUGAUAu -3' miRNA: 3'- gUUGCUGCUGUCGCu----GCUgU----UACUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 51853 | 0.76 | 0.784029 |
Target: 5'- uGACGACGACAaCGACGACugcGAUGu -3' miRNA: 3'- gUUGCUGCUGUcGCUGCUGuuaCUAU- -5' |
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32854 | 3' | -48.9 | NC_007383.1 | + | 45415 | 0.91 | 0.158641 |
Target: 5'- aCGACGACGACGaCGACGGCAGUGAUGa -3' miRNA: 3'- -GUUGCUGCUGUcGCUGCUGUUACUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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