miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32869 3' -43.7 NC_007383.1 + 94634 0.66 1
Target:  5'- aUGGCAUCGGguUCGUcgu--CGAu-- -3'
miRNA:   3'- -GCUGUAGCCguAGCAaauuuGCUuuu -5'
32869 3' -43.7 NC_007383.1 + 119932 0.66 0.999999
Target:  5'- aGGCGUCGaGCGU-GUUUcgcAAGCGAGGu -3'
miRNA:   3'- gCUGUAGC-CGUAgCAAA---UUUGCUUUu -5'
32869 3' -43.7 NC_007383.1 + 44339 0.67 0.999998
Target:  5'- uCGGCGUCGGCGcCGUgu---CGAu-- -3'
miRNA:   3'- -GCUGUAGCCGUaGCAaauuuGCUuuu -5'
32869 3' -43.7 NC_007383.1 + 125222 0.67 0.999997
Target:  5'- uCGGCGUCGGCGcCGUgucgaugcgugaucGAACGAu-- -3'
miRNA:   3'- -GCUGUAGCCGUaGCAaa------------UUUGCUuuu -5'
32869 3' -43.7 NC_007383.1 + 84616 0.67 0.999997
Target:  5'- gCGucCAUCGGCGUCGcc--GACGAc-- -3'
miRNA:   3'- -GCu-GUAGCCGUAGCaaauUUGCUuuu -5'
32869 3' -43.7 NC_007383.1 + 43424 0.67 0.999997
Target:  5'- uCGGCGUCGGCGcCGUgucgaugcgugaucGAACGAu-- -3'
miRNA:   3'- -GCUGUAGCCGUaGCAaa------------UUUGCUuuu -5'
32869 3' -43.7 NC_007383.1 + 61774 0.67 0.999997
Target:  5'- -uAUAUCGGUAauUUGUUUGGGCGAu-- -3'
miRNA:   3'- gcUGUAGCCGU--AGCAAAUUUGCUuuu -5'
32869 3' -43.7 NC_007383.1 + 60191 0.67 0.999993
Target:  5'- aCGACAUCGGCccuGUCGU-----CGAGu- -3'
miRNA:   3'- -GCUGUAGCCG---UAGCAaauuuGCUUuu -5'
32869 3' -43.7 NC_007383.1 + 117719 0.67 0.99999
Target:  5'- cCGAa---GGCAUCGgUUUAAACGAu-- -3'
miRNA:   3'- -GCUguagCCGUAGC-AAAUUUGCUuuu -5'
32869 3' -43.7 NC_007383.1 + 57680 0.68 0.999986
Target:  5'- aGACGUUGGUAg-GUUU-AACGAAAAc -3'
miRNA:   3'- gCUGUAGCCGUagCAAAuUUGCUUUU- -5'
32869 3' -43.7 NC_007383.1 + 43318 0.68 0.999973
Target:  5'- uCGACGUCGGCGacggcUCGUacgguuGCGAc-- -3'
miRNA:   3'- -GCUGUAGCCGU-----AGCAaauu--UGCUuuu -5'
32869 3' -43.7 NC_007383.1 + 20646 0.68 0.999973
Target:  5'- uGACAaUGGCGUCGgcgacAACGGAAc -3'
miRNA:   3'- gCUGUaGCCGUAGCaaau-UUGCUUUu -5'
32869 3' -43.7 NC_007383.1 + 125328 0.68 0.999973
Target:  5'- uCGACGUCGGCGacggcUCGUacgguuGCGAc-- -3'
miRNA:   3'- -GCUGUAGCCGU-----AGCAaauu--UGCUuuu -5'
32869 3' -43.7 NC_007383.1 + 82015 0.69 0.999908
Target:  5'- uGGCGUCGGgAUCG-----GCGAGAAg -3'
miRNA:   3'- gCUGUAGCCgUAGCaaauuUGCUUUU- -5'
32869 3' -43.7 NC_007383.1 + 105190 0.7 0.99962
Target:  5'- aUGACGUCGGCAgCGgcaaaaaacGCGAGAAc -3'
miRNA:   3'- -GCUGUAGCCGUaGCaaauu----UGCUUUU- -5'
32869 3' -43.7 NC_007383.1 + 68911 0.7 0.999551
Target:  5'- cCGACGaCGGCAcgauacgcguuaaUCGggUAAACGAAc- -3'
miRNA:   3'- -GCUGUaGCCGU-------------AGCaaAUUUGCUUuu -5'
32869 3' -43.7 NC_007383.1 + 85844 0.72 0.998389
Target:  5'- aGAgGUCGGCGUCGgcgAAACGc--- -3'
miRNA:   3'- gCUgUAGCCGUAGCaaaUUUGCuuuu -5'
32869 3' -43.7 NC_007383.1 + 23713 0.72 0.998043
Target:  5'- gCGGCGaCGGCAUCGgc--GGCGGAGGu -3'
miRNA:   3'- -GCUGUaGCCGUAGCaaauUUGCUUUU- -5'
32869 3' -43.7 NC_007383.1 + 81026 0.73 0.995976
Target:  5'- gGGCGgcaGGCGUCGUUcuAGCGGAGGg -3'
miRNA:   3'- gCUGUag-CCGUAGCAAauUUGCUUUU- -5'
32869 3' -43.7 NC_007383.1 + 80788 0.74 0.992387
Target:  5'- gCGACGUCGGCcgcCGcUUGAGCGAc-- -3'
miRNA:   3'- -GCUGUAGCCGua-GCaAAUUUGCUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.