miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33030 5' -56.5 NC_007497.1 + 1821 0.93 0.010314
Target:  5'- uUCAUCCCGGAACG-GcACCGGACACACa -3'
miRNA:   3'- -AGUAGGGCCUUGCgC-UGGCCUGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 38140 0.8 0.085384
Target:  5'- cUCGUCCCGGAucacguucgcGCcgGCGACCGuGGCGCGCc -3'
miRNA:   3'- -AGUAGGGCCU----------UG--CGCUGGC-CUGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 15250 0.76 0.162663
Target:  5'- gCAUCCCGcGGACGcCGGCCGagcgccgcgaGGCGCGCa -3'
miRNA:   3'- aGUAGGGC-CUUGC-GCUGGC----------CUGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 41325 0.75 0.181336
Target:  5'- -gGUUCCGGAGCugaucgGCGACCGGAUcgucaGCGCg -3'
miRNA:   3'- agUAGGGCCUUG------CGCUGGCCUG-----UGUG- -5'
33030 5' -56.5 NC_007497.1 + 11672 0.73 0.264898
Target:  5'- gCggCCCGGAAC-CGgcacggccgggaguaGCCGGGCGCGCg -3'
miRNA:   3'- aGuaGGGCCUUGcGC---------------UGGCCUGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 24629 0.72 0.282961
Target:  5'- aCAUCCCgGGAAC-CGGCUGGGCAg-- -3'
miRNA:   3'- aGUAGGG-CCUUGcGCUGGCCUGUgug -5'
33030 5' -56.5 NC_007497.1 + 38589 0.71 0.31263
Target:  5'- cUCAaacUCCCGGAaugauucgAUGCGGCCGcaacaGCGCACg -3'
miRNA:   3'- -AGU---AGGGCCU--------UGCGCUGGCc----UGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 32656 0.71 0.344599
Target:  5'- uUCGguuggCUCGGcAAUGCGAUCGGACuugGCGCg -3'
miRNA:   3'- -AGUa----GGGCC-UUGCGCUGGCCUG---UGUG- -5'
33030 5' -56.5 NC_007497.1 + 1782 0.7 0.360587
Target:  5'- -gAUCCCcgcuGggUGCGGCCGGgagugcuGCGCACg -3'
miRNA:   3'- agUAGGGc---CuuGCGCUGGCC-------UGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 23875 0.7 0.361443
Target:  5'- cUCAUCCgGcGugaAGCGCuGGCCGGcGCGCACg -3'
miRNA:   3'- -AGUAGGgC-C---UUGCG-CUGGCC-UGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 16234 0.7 0.370077
Target:  5'- cCGUCUCGGuGCGUG-CCGGGaucaGCGCa -3'
miRNA:   3'- aGUAGGGCCuUGCGCuGGCCUg---UGUG- -5'
33030 5' -56.5 NC_007497.1 + 21697 0.69 0.415313
Target:  5'- aUC-UUCCGGAACGUGuCCGcgacgagcuGACGCGCu -3'
miRNA:   3'- -AGuAGGGCCUUGCGCuGGC---------CUGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 32832 0.69 0.42476
Target:  5'- -aGUCcgCCGaGAACGCcGCUGGGCGCGCc -3'
miRNA:   3'- agUAG--GGC-CUUGCGcUGGCCUGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 23192 0.69 0.453849
Target:  5'- gCAUCgCCGGccagcagugcgAGCGCGACUacGACGCGCu -3'
miRNA:   3'- aGUAG-GGCC-----------UUGCGCUGGc-CUGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 34592 0.69 0.453849
Target:  5'- ----gCCGuuuGCGCGACCGcGGCACGCu -3'
miRNA:   3'- aguagGGCcu-UGCGCUGGC-CUGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 34946 0.68 0.482966
Target:  5'- -aAUCgCCGGGACgccguauGCGGCCGuGAuCGCGCg -3'
miRNA:   3'- agUAG-GGCCUUG-------CGCUGGC-CU-GUGUG- -5'
33030 5' -56.5 NC_007497.1 + 4107 0.68 0.483987
Target:  5'- -gGUUCgGGGACGCGgcgGCCGaGACgGCACg -3'
miRNA:   3'- agUAGGgCCUUGCGC---UGGC-CUG-UGUG- -5'
33030 5' -56.5 NC_007497.1 + 23588 0.67 0.536203
Target:  5'- aUC-UCCUGGucGCGCuGCUGGGCGCGg -3'
miRNA:   3'- -AGuAGGGCCu-UGCGcUGGCCUGUGUg -5'
33030 5' -56.5 NC_007497.1 + 20852 0.67 0.546894
Target:  5'- aUCGUCcgaaCCGcGAgcACGCGcUCGGGCACAUg -3'
miRNA:   3'- -AGUAG----GGC-CU--UGCGCuGGCCUGUGUG- -5'
33030 5' -56.5 NC_007497.1 + 17631 0.67 0.55765
Target:  5'- gUCAcCUCGGcGCGCGGcuccggcuggcCCGGAUugGCu -3'
miRNA:   3'- -AGUaGGGCCuUGCGCU-----------GGCCUGugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.