miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33031 3' -50.4 NC_007497.1 + 9921 0.68 0.808644
Target:  5'- cGCUGGCuu-GUcaUUCGAGCGGuauAGUACc -3'
miRNA:   3'- -CGGCCGuguCA--AAGUUCGCUu--UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 3097 0.68 0.808644
Target:  5'- -aUGGCgACGGUUUCGaaGGCGGcaauucugaAAGCGCu -3'
miRNA:   3'- cgGCCG-UGUCAAAGU--UCGCU---------UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 2463 0.68 0.808644
Target:  5'- -gCGGCACAGgcgcugUUUgggaGGGCGAcGGCAUg -3'
miRNA:   3'- cgGCCGUGUCa-----AAG----UUCGCUuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 43358 0.68 0.808644
Target:  5'- gGCCGGCGCAGacuucuggaUCAAugcaggguuGCcGGAGCGCg -3'
miRNA:   3'- -CGGCCGUGUCaa-------AGUU---------CGcUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 27584 0.68 0.80258
Target:  5'- cGUCGGCcgccgacuggaucacGCAGUUgCAGGCGAAucGCGg -3'
miRNA:   3'- -CGGCCG---------------UGUCAAaGUUCGCUUu-CGUg -5'
33031 3' -50.4 NC_007497.1 + 23188 0.68 0.79747
Target:  5'- cGCCGGCcaGCAGUg-CGAGCGcgacuacGAcGCGCu -3'
miRNA:   3'- -CGGCCG--UGUCAaaGUUCGC-------UUuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 3733 0.68 0.788153
Target:  5'- cGCCGGCcuuCAGUcgacCGAGCGccuGCAUg -3'
miRNA:   3'- -CGGCCGu--GUCAaa--GUUCGCuuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 40511 0.68 0.788153
Target:  5'- cCCGGCGuggcGUUUCcGGCGguAGCGCc -3'
miRNA:   3'- cGGCCGUgu--CAAAGuUCGCuuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 12781 0.68 0.788153
Target:  5'- aGCCGGC-CGGUUgcuccCucGCGGGucccGGCGCa -3'
miRNA:   3'- -CGGCCGuGUCAAa----GuuCGCUU----UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 9695 0.68 0.777627
Target:  5'- gGCCGGCGCGc---CGGGUGuGAAGCAUc -3'
miRNA:   3'- -CGGCCGUGUcaaaGUUCGC-UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 1712 0.68 0.777627
Target:  5'- cGCuCGG-GCAGUUUCucgcGAGCGAu-GCACu -3'
miRNA:   3'- -CG-GCCgUGUCAAAG----UUCGCUuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 18613 0.68 0.777627
Target:  5'- -gCGGCACGGa--UAAGCGGcucAAGCGCc -3'
miRNA:   3'- cgGCCGUGUCaaaGUUCGCU---UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 2040 0.68 0.777627
Target:  5'- aCCGGCGCGGUUcugaUCGAGCcau-GCGu -3'
miRNA:   3'- cGGCCGUGUCAA----AGUUCGcuuuCGUg -5'
33031 3' -50.4 NC_007497.1 + 38287 0.69 0.756079
Target:  5'- gGCUGGCugaccuGCAGgccgaUUUCcugaagcuGGCGAAAGCGCa -3'
miRNA:   3'- -CGGCCG------UGUC-----AAAGu-------UCGCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 41415 0.69 0.756079
Target:  5'- cGCCGGCACcgAGcgccUUCGAGaaGAAAGCGg -3'
miRNA:   3'- -CGGCCGUG--UCa---AAGUUCg-CUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 23230 0.69 0.745085
Target:  5'- cGCCGGCugcCGGgcUUCcGGCGGAAGUg- -3'
miRNA:   3'- -CGGCCGu--GUCa-AAGuUCGCUUUCGug -5'
33031 3' -50.4 NC_007497.1 + 23503 0.69 0.733962
Target:  5'- gGCCGccGCuCAGgccCAGGCGAAGGCGg -3'
miRNA:   3'- -CGGC--CGuGUCaaaGUUCGCUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 38211 0.69 0.733962
Target:  5'- cGCCGGCGCGaacGUgaucCGGGaCGAGGcGCGCg -3'
miRNA:   3'- -CGGCCGUGU---CAaa--GUUC-GCUUU-CGUG- -5'
33031 3' -50.4 NC_007497.1 + 6951 0.69 0.722724
Target:  5'- uGCCGGCcggaucagccACAGgacCAGGCGugcauAAGGCGCu -3'
miRNA:   3'- -CGGCCG----------UGUCaaaGUUCGC-----UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 36649 0.69 0.722724
Target:  5'- gGCCGGCACAcgaUCGGGUggucacGAAGGCGa -3'
miRNA:   3'- -CGGCCGUGUcaaAGUUCG------CUUUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.