miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33031 3' -50.4 NC_007497.1 + 16271 0.69 0.711384
Target:  5'- gGCCGGCGCGcuccgUUCAacAGCGGc-GCACc -3'
miRNA:   3'- -CGGCCGUGUca---AAGU--UCGCUuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 16315 0.73 0.504286
Target:  5'- cGUCGGCGUAGUgg-AAGUGAGGGCGCc -3'
miRNA:   3'- -CGGCCGUGUCAaagUUCGCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 16832 0.66 0.892321
Target:  5'- cGCCGGCGCGGgugcggggcucuUUUCGuuguGGgGAGucaugcugccuccguAGCGCg -3'
miRNA:   3'- -CGGCCGUGUC------------AAAGU----UCgCUU---------------UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 17191 0.66 0.873196
Target:  5'- gGCgCGGCACAucucaaaagUCGGuGCGAcAGGCACa -3'
miRNA:   3'- -CG-GCCGUGUcaa------AGUU-CGCU-UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 18513 0.66 0.864744
Target:  5'- gGCCGGCccgACGaUUcgCGAGCGGgucgAGGCGCu -3'
miRNA:   3'- -CGGCCG---UGUcAAa-GUUCGCU----UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 18613 0.68 0.777627
Target:  5'- -gCGGCACGGa--UAAGCGGcucAAGCGCc -3'
miRNA:   3'- cgGCCGUGUCaaaGUUCGCU---UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 18798 0.71 0.630293
Target:  5'- cGCCGGCAguGgauUUguGGUGGAAGC-Cg -3'
miRNA:   3'- -CGGCCGUguCa--AAguUCGCUUUCGuG- -5'
33031 3' -50.4 NC_007497.1 + 19914 0.66 0.896839
Target:  5'- uGCCGGUuuccauCAGgcgUCGuaauGCGAAGGCc- -3'
miRNA:   3'- -CGGCCGu-----GUCaa-AGUu---CGCUUUCGug -5'
33031 3' -50.4 NC_007497.1 + 20468 0.71 0.606956
Target:  5'- aGCCGuGCAgAGccaaUUCAGGCucAGGCACa -3'
miRNA:   3'- -CGGC-CGUgUCa---AAGUUCGcuUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 20518 0.77 0.286133
Target:  5'- cGCCGGCaucACAGUUguaacagCAAGCGAuggucgcGAGUACa -3'
miRNA:   3'- -CGGCCG---UGUCAAa------GUUCGCU-------UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 21563 0.67 0.837787
Target:  5'- cGUgGGCGCAGcucgUCGacGGCGucuuGGCGCu -3'
miRNA:   3'- -CGgCCGUGUCaa--AGU--UCGCuu--UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 23188 0.68 0.79747
Target:  5'- cGCCGGCcaGCAGUg-CGAGCGcgacuacGAcGCGCu -3'
miRNA:   3'- -CGGCCG--UGUCAaaGUUCGC-------UUuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 23230 0.69 0.745085
Target:  5'- cGCCGGCugcCGGgcUUCcGGCGGAAGUg- -3'
miRNA:   3'- -CGGCCGu--GUCa-AAGuUCGCUUUCGug -5'
33031 3' -50.4 NC_007497.1 + 23503 0.69 0.733962
Target:  5'- gGCCGccGCuCAGgccCAGGCGAAGGCGg -3'
miRNA:   3'- -CGGC--CGuGUCaaaGUUCGCUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 23705 0.7 0.653638
Target:  5'- gGCCGGcCGCAGUgggUCAcggccGGCGGccGCGu -3'
miRNA:   3'- -CGGCC-GUGUCAa--AGU-----UCGCUuuCGUg -5'
33031 3' -50.4 NC_007497.1 + 23866 0.67 0.856019
Target:  5'- cGCgCGGCACuca-UCcGGCGuGAAGCGCu -3'
miRNA:   3'- -CG-GCCGUGucaaAGuUCGC-UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 24981 0.69 0.711384
Target:  5'- gGUCGGC-CAGgcggUCAacAGCGAucuGCACu -3'
miRNA:   3'- -CGGCCGuGUCaa--AGU--UCGCUuu-CGUG- -5'
33031 3' -50.4 NC_007497.1 + 26992 0.68 0.812645
Target:  5'- uCCGGCGCGGUauggaugcuggaAAGCGAu-GCGCu -3'
miRNA:   3'- cGGCCGUGUCAaag---------UUCGCUuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 27149 0.71 0.595317
Target:  5'- uGCCGGCGCGGUUgUCGuGUugGAcaAGGCGCc -3'
miRNA:   3'- -CGGCCGUGUCAA-AGUuCG--CU--UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 27336 0.67 0.856019
Target:  5'- uCgGGUGCAcGUcgCAGGCGcAGGCACa -3'
miRNA:   3'- cGgCCGUGU-CAaaGUUCGCuUUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.