miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33031 3' -50.4 NC_007497.1 + 1712 0.68 0.777627
Target:  5'- cGCuCGG-GCAGUUUCucgcGAGCGAu-GCACu -3'
miRNA:   3'- -CG-GCCgUGUCAAAG----UUCGCUuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 1964 1.04 0.004947
Target:  5'- gGCCGGCACAGUUUCAAGCGA-AGCACg -3'
miRNA:   3'- -CGGCCGUGUCAAAGUUCGCUuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 2040 0.68 0.777627
Target:  5'- aCCGGCGCGGUUcugaUCGAGCcau-GCGu -3'
miRNA:   3'- cGGCCGUGUCAA----AGUUCGcuuuCGUg -5'
33031 3' -50.4 NC_007497.1 + 2463 0.68 0.808644
Target:  5'- -gCGGCACAGgcgcugUUUgggaGGGCGAcGGCAUg -3'
miRNA:   3'- cgGCCGUGUCa-----AAG----UUCGCUuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 2552 0.66 0.864744
Target:  5'- cGCCGGCggccGCGGcg-CAuccuuGCGAuuuccGAGCGCg -3'
miRNA:   3'- -CGGCCG----UGUCaaaGUu----CGCU-----UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 3097 0.68 0.808644
Target:  5'- -aUGGCgACGGUUUCGaaGGCGGcaauucugaAAGCGCu -3'
miRNA:   3'- cgGCCG-UGUCAAAGU--UCGCU---------UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 3206 0.67 0.84703
Target:  5'- gGCCGGCGCcGUc-CGAGCGcGAGaCAg -3'
miRNA:   3'- -CGGCCGUGuCAaaGUUCGCuUUC-GUg -5'
33031 3' -50.4 NC_007497.1 + 3733 0.68 0.788153
Target:  5'- cGCCGGCcuuCAGUcgacCGAGCGccuGCAUg -3'
miRNA:   3'- -CGGCCGu--GUCAaa--GUUCGCuuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 3784 0.66 0.881368
Target:  5'- gGCCGGCGCGaugaaCAAGacCGAGcAGCGCu -3'
miRNA:   3'- -CGGCCGUGUcaaa-GUUC--GCUU-UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 4002 0.66 0.881368
Target:  5'- cGCCGGCACGaagaacgUCGGGac--GGCACg -3'
miRNA:   3'- -CGGCCGUGUcaa----AGUUCgcuuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 4964 0.76 0.327192
Target:  5'- gGCCGGUGCGGccgUC-GGCGGAGGCAa -3'
miRNA:   3'- -CGGCCGUGUCaa-AGuUCGCUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 6951 0.69 0.722724
Target:  5'- uGCCGGCcggaucagccACAGgacCAGGCGugcauAAGGCGCu -3'
miRNA:   3'- -CGGCCG----------UGUCaaaGUUCGC-----UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 8752 0.66 0.873196
Target:  5'- aCCGGCGCAGg--CAAGCugugccgacGAcGGCGa -3'
miRNA:   3'- cGGCCGUGUCaaaGUUCG---------CUuUCGUg -5'
33031 3' -50.4 NC_007497.1 + 9695 0.68 0.777627
Target:  5'- gGCCGGCGCGc---CGGGUGuGAAGCAUc -3'
miRNA:   3'- -CGGCCGUGUcaaaGUUCGC-UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 9921 0.68 0.808644
Target:  5'- cGCUGGCuu-GUcaUUCGAGCGGuauAGUACc -3'
miRNA:   3'- -CGGCCGuguCA--AAGUUCGCUu--UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 12096 0.7 0.658299
Target:  5'- gGCCGGCgAUGGUcgagCGaccgaaucgugguggAGCGAAAGCGCc -3'
miRNA:   3'- -CGGCCG-UGUCAaa--GU---------------UCGCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 12781 0.68 0.788153
Target:  5'- aGCCGGC-CGGUUgcuccCucGCGGGucccGGCGCa -3'
miRNA:   3'- -CGGCCGuGUCAAa----GuuCGCUU----UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 14166 0.71 0.630293
Target:  5'- cGCCGGCguccacgcaGCAgGUUUC-AGCGuAGAGCAg -3'
miRNA:   3'- -CGGCCG---------UGU-CAAAGuUCGC-UUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 14441 0.79 0.230075
Target:  5'- gGCgGGCGCGGUUgaUCAGGUGAcuucucguucggcGAGCACu -3'
miRNA:   3'- -CGgCCGUGUCAA--AGUUCGCU-------------UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 14981 0.7 0.688455
Target:  5'- aGCCGGUGCGGcaUUUCAcgaucaauggaGGCGugugauGGCACu -3'
miRNA:   3'- -CGGCCGUGUC--AAAGU-----------UCGCuu----UCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.