miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33031 3' -50.4 NC_007497.1 + 8752 0.66 0.873196
Target:  5'- aCCGGCGCAGg--CAAGCugugccgacGAcGGCGa -3'
miRNA:   3'- cGGCCGUGUCaaaGUUCG---------CUuUCGUg -5'
33031 3' -50.4 NC_007497.1 + 40511 0.68 0.788153
Target:  5'- cCCGGCGuggcGUUUCcGGCGguAGCGCc -3'
miRNA:   3'- cGGCCGUgu--CAAAGuUCGCuuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 27584 0.68 0.80258
Target:  5'- cGUCGGCcgccgacuggaucacGCAGUUgCAGGCGAAucGCGg -3'
miRNA:   3'- -CGGCCG---------------UGUCAAaGUUCGCUUu-CGUg -5'
33031 3' -50.4 NC_007497.1 + 9921 0.68 0.808644
Target:  5'- cGCUGGCuu-GUcaUUCGAGCGGuauAGUACc -3'
miRNA:   3'- -CGGCCGuguCA--AAGUUCGCUu--UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 43086 0.67 0.828301
Target:  5'- cGCCGGCGCAaucUCuuuGCGGcgcuccAGCACg -3'
miRNA:   3'- -CGGCCGUGUcaaAGuu-CGCUu-----UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 21563 0.67 0.837787
Target:  5'- cGUgGGCGCAGcucgUCGacGGCGucuuGGCGCu -3'
miRNA:   3'- -CGgCCGUGUCaa--AGU--UCGCuu--UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 23866 0.67 0.856019
Target:  5'- cGCgCGGCACuca-UCcGGCGuGAAGCGCu -3'
miRNA:   3'- -CG-GCCGUGucaaAGuUCGC-UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 2552 0.66 0.864744
Target:  5'- cGCCGGCggccGCGGcg-CAuccuuGCGAuuuccGAGCGCg -3'
miRNA:   3'- -CGGCCG----UGUCaaaGUu----CGCU-----UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 18513 0.66 0.864744
Target:  5'- gGCCGGCccgACGaUUcgCGAGCGGgucgAGGCGCu -3'
miRNA:   3'- -CGGCCG---UGUcAAa-GUUCGCU----UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 3733 0.68 0.788153
Target:  5'- cGCCGGCcuuCAGUcgacCGAGCGccuGCAUg -3'
miRNA:   3'- -CGGCCGu--GUCAaa--GUUCGCuuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 2040 0.68 0.777627
Target:  5'- aCCGGCGCGGUUcugaUCGAGCcau-GCGu -3'
miRNA:   3'- cGGCCGUGUCAA----AGUUCGcuuuCGUg -5'
33031 3' -50.4 NC_007497.1 + 41415 0.69 0.756079
Target:  5'- cGCCGGCACcgAGcgccUUCGAGaaGAAAGCGg -3'
miRNA:   3'- -CGGCCGUG--UCa---AAGUUCg-CUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 20468 0.71 0.606956
Target:  5'- aGCCGuGCAgAGccaaUUCAGGCucAGGCACa -3'
miRNA:   3'- -CGGC-CGUgUCa---AAGUUCGcuUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 18798 0.71 0.630293
Target:  5'- cGCCGGCAguGgauUUguGGUGGAAGC-Cg -3'
miRNA:   3'- -CGGCCGUguCa--AAguUCGCUUUCGuG- -5'
33031 3' -50.4 NC_007497.1 + 12096 0.7 0.658299
Target:  5'- gGCCGGCgAUGGUcgagCGaccgaaucgugguggAGCGAAAGCGCc -3'
miRNA:   3'- -CGGCCG-UGUCAaa--GU---------------UCGCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 14981 0.7 0.688455
Target:  5'- aGCCGGUGCGGcaUUUCAcgaucaauggaGGCGugugauGGCACu -3'
miRNA:   3'- -CGGCCGUGUC--AAAGU-----------UCGCuu----UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 16271 0.69 0.711384
Target:  5'- gGCCGGCGCGcuccgUUCAacAGCGGc-GCACc -3'
miRNA:   3'- -CGGCCGUGUca---AAGU--UCGCUuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 6951 0.69 0.722724
Target:  5'- uGCCGGCcggaucagccACAGgacCAGGCGugcauAAGGCGCu -3'
miRNA:   3'- -CGGCCG----------UGUCaaaGUUCGC-----UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 29762 0.69 0.722724
Target:  5'- uUCGGCGuccgcgUAGUcUUCGGGCGcGAGCGCg -3'
miRNA:   3'- cGGCCGU------GUCA-AAGUUCGCuUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 23230 0.69 0.745085
Target:  5'- cGCCGGCugcCGGgcUUCcGGCGGAAGUg- -3'
miRNA:   3'- -CGGCCGu--GUCa-AAGuUCGCUUUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.