miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33031 3' -50.4 NC_007497.1 + 1964 1.04 0.004947
Target:  5'- gGCCGGCACAGUUUCAAGCGA-AGCACg -3'
miRNA:   3'- -CGGCCGUGUCAAAGUUCGCUuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 14441 0.79 0.230075
Target:  5'- gGCgGGCGCGGUUgaUCAGGUGAcuucucguucggcGAGCACu -3'
miRNA:   3'- -CGgCCGUGUCAA--AGUUCGCU-------------UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 29195 0.78 0.250615
Target:  5'- cGCUGGCACGcGUUUCGGGCGcguGCAUc -3'
miRNA:   3'- -CGGCCGUGU-CAAAGUUCGCuuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 20518 0.77 0.286133
Target:  5'- cGCCGGCaucACAGUUguaacagCAAGCGAuggucgcGAGUACa -3'
miRNA:   3'- -CGGCCG---UGUCAAa------GUUCGCU-------UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 4964 0.76 0.327192
Target:  5'- gGCCGGUGCGGccgUC-GGCGGAGGCAa -3'
miRNA:   3'- -CGGCCGUGUCaa-AGuUCGCUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 32309 0.75 0.40003
Target:  5'- uGCUGGCggGCAG-UUCGguGGCGAuAGCGCg -3'
miRNA:   3'- -CGGCCG--UGUCaAAGU--UCGCUuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 16315 0.73 0.504286
Target:  5'- cGUCGGCGUAGUgg-AAGUGAGGGCGCc -3'
miRNA:   3'- -CGGCCGUGUCAaagUUCGCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 34551 0.72 0.537854
Target:  5'- cGUCGGCACGGU----GGCGcuuGGCGCg -3'
miRNA:   3'- -CGGCCGUGUCAaaguUCGCuu-UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 27149 0.71 0.595317
Target:  5'- uGCCGGCGCGGUUgUCGuGUugGAcaAGGCGCc -3'
miRNA:   3'- -CGGCCGUGUCAA-AGUuCG--CU--UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 20468 0.71 0.606956
Target:  5'- aGCCGuGCAgAGccaaUUCAGGCucAGGCACa -3'
miRNA:   3'- -CGGC-CGUgUCa---AAGUUCGcuUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 18798 0.71 0.630293
Target:  5'- cGCCGGCAguGgauUUguGGUGGAAGC-Cg -3'
miRNA:   3'- -CGGCCGUguCa--AAguUCGCUUUCGuG- -5'
33031 3' -50.4 NC_007497.1 + 14166 0.71 0.630293
Target:  5'- cGCCGGCguccacgcaGCAgGUUUC-AGCGuAGAGCAg -3'
miRNA:   3'- -CGGCCG---------UGU-CAAAGuUCGC-UUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 23705 0.7 0.653638
Target:  5'- gGCCGGcCGCAGUgggUCAcggccGGCGGccGCGu -3'
miRNA:   3'- -CGGCC-GUGUCAa--AGU-----UCGCUuuCGUg -5'
33031 3' -50.4 NC_007497.1 + 12096 0.7 0.658299
Target:  5'- gGCCGGCgAUGGUcgagCGaccgaaucgugguggAGCGAAAGCGCc -3'
miRNA:   3'- -CGGCCG-UGUCAaa--GU---------------UCGCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 35614 0.7 0.676893
Target:  5'- gGCCGGgGCAcg-UCgGAGCuGAAGGCGCu -3'
miRNA:   3'- -CGGCCgUGUcaaAG-UUCG-CUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 14981 0.7 0.688455
Target:  5'- aGCCGGUGCGGcaUUUCAcgaucaauggaGGCGugugauGGCACu -3'
miRNA:   3'- -CGGCCGUGUC--AAAGU-----------UCGCuu----UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 36395 0.7 0.699957
Target:  5'- cGUCGGC--AGUUUucCAGGCGcAGGGCGCg -3'
miRNA:   3'- -CGGCCGugUCAAA--GUUCGC-UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 24981 0.69 0.711384
Target:  5'- gGUCGGC-CAGgcggUCAacAGCGAucuGCACu -3'
miRNA:   3'- -CGGCCGuGUCaa--AGU--UCGCUuu-CGUG- -5'
33031 3' -50.4 NC_007497.1 + 16271 0.69 0.711384
Target:  5'- gGCCGGCGCGcuccgUUCAacAGCGGc-GCACc -3'
miRNA:   3'- -CGGCCGUGUca---AAGU--UCGCUuuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 6951 0.69 0.722724
Target:  5'- uGCCGGCcggaucagccACAGgacCAGGCGugcauAAGGCGCu -3'
miRNA:   3'- -CGGCCG----------UGUCaaaGUUCGC-----UUUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.