miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33031 3' -50.4 NC_007497.1 + 44625 0.66 0.881368
Target:  5'- uGCCGGCGauCAGUcUCAgcAGCc--GGCGCc -3'
miRNA:   3'- -CGGCCGU--GUCAaAGU--UCGcuuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 43358 0.68 0.808644
Target:  5'- gGCCGGCGCAGacuucuggaUCAAugcaggguuGCcGGAGCGCg -3'
miRNA:   3'- -CGGCCGUGUCaa-------AGUU---------CGcUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 43086 0.67 0.828301
Target:  5'- cGCCGGCGCAaucUCuuuGCGGcgcuccAGCACg -3'
miRNA:   3'- -CGGCCGUGUcaaAGuu-CGCUu-----UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 42459 0.69 0.722724
Target:  5'- uCCGGCGCGG---CGAGCuGAAugguGGCACg -3'
miRNA:   3'- cGGCCGUGUCaaaGUUCG-CUU----UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 41415 0.69 0.756079
Target:  5'- cGCCGGCACcgAGcgccUUCGAGaaGAAAGCGg -3'
miRNA:   3'- -CGGCCGUG--UCa---AAGUUCg-CUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 40511 0.68 0.788153
Target:  5'- cCCGGCGuggcGUUUCcGGCGguAGCGCc -3'
miRNA:   3'- cGGCCGUgu--CAAAGuUCGCuuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 39054 0.69 0.722724
Target:  5'- aGCUGGaagACGGUgccCGAGCGGucGGCGCa -3'
miRNA:   3'- -CGGCCg--UGUCAaa-GUUCGCUu-UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 38319 0.66 0.896839
Target:  5'- aGCaCGGCaacgaugucguACAGUUgaUCGccguAGCGAAuGCGCa -3'
miRNA:   3'- -CG-GCCG-----------UGUCAA--AGU----UCGCUUuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 38287 0.69 0.756079
Target:  5'- gGCUGGCugaccuGCAGgccgaUUUCcugaagcuGGCGAAAGCGCa -3'
miRNA:   3'- -CGGCCG------UGUC-----AAAGu-------UCGCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 38211 0.69 0.733962
Target:  5'- cGCCGGCGCGaacGUgaucCGGGaCGAGGcGCGCg -3'
miRNA:   3'- -CGGCCGUGU---CAaa--GUUC-GCUUU-CGUG- -5'
33031 3' -50.4 NC_007497.1 + 37981 0.67 0.818583
Target:  5'- gGCCGGCguucgACGcGUcgaucgcUCAGGcCGAGGGCGCa -3'
miRNA:   3'- -CGGCCG-----UGU-CAa------AGUUC-GCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 36649 0.69 0.722724
Target:  5'- gGCCGGCACAcgaUCGGGUggucacGAAGGCGa -3'
miRNA:   3'- -CGGCCGUGUcaaAGUUCG------CUUUCGUg -5'
33031 3' -50.4 NC_007497.1 + 36395 0.7 0.699957
Target:  5'- cGUCGGC--AGUUUucCAGGCGcAGGGCGCg -3'
miRNA:   3'- -CGGCCGugUCAAA--GUUCGC-UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 35614 0.7 0.676893
Target:  5'- gGCCGGgGCAcg-UCgGAGCuGAAGGCGCu -3'
miRNA:   3'- -CGGCCgUGUcaaAG-UUCG-CUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 35040 0.66 0.88925
Target:  5'- aGCUGGCcgAGgcgCGAGCGAuugAAGCAa -3'
miRNA:   3'- -CGGCCGugUCaaaGUUCGCU---UUCGUg -5'
33031 3' -50.4 NC_007497.1 + 34752 0.66 0.896839
Target:  5'- cGCCGaGCGCgaAGUagCGAucGCGAcgcAGGCGCg -3'
miRNA:   3'- -CGGC-CGUG--UCAaaGUU--CGCU---UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 34551 0.72 0.537854
Target:  5'- cGUCGGCACGGU----GGCGcuuGGCGCg -3'
miRNA:   3'- -CGGCCGUGUCAaaguUCGCuu-UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 32309 0.75 0.40003
Target:  5'- uGCUGGCggGCAG-UUCGguGGCGAuAGCGCg -3'
miRNA:   3'- -CGGCCG--UGUCaAAGU--UCGCUuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 30422 0.66 0.896839
Target:  5'- cGCCGGCGCAcg--CuGGCG-AAGUAUc -3'
miRNA:   3'- -CGGCCGUGUcaaaGuUCGCuUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 29762 0.69 0.722724
Target:  5'- uUCGGCGuccgcgUAGUcUUCGGGCGcGAGCGCg -3'
miRNA:   3'- cGGCCGU------GUCA-AAGUUCGCuUUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.