miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33032 5' -57.3 NC_007497.1 + 399 0.73 0.186113
Target:  5'- gCGCGCC-GCACUGCUGcucuugccAGCGCGcCAc -3'
miRNA:   3'- -GCGUGGcCGUGACGAU--------UCGCGCuGUa -5'
33032 5' -57.3 NC_007497.1 + 473 0.68 0.401181
Target:  5'- gCGCGCUGGCAagaGCagcAGUGCGGCGc -3'
miRNA:   3'- -GCGUGGCCGUga-CGau-UCGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 2036 0.69 0.331057
Target:  5'- gCGUACCGGCGCgguuCUGAucgagccauGCGUGACAc -3'
miRNA:   3'- -GCGUGGCCGUGac--GAUU---------CGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 2435 0.69 0.33931
Target:  5'- aGUGCCGGUGCgccGCUGGgcguucGCGCGGCGa -3'
miRNA:   3'- gCGUGGCCGUGa--CGAUU------CGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 2461 0.73 0.186113
Target:  5'- gGCACaGGCGCUGUUuggGAGgGCGACGg -3'
miRNA:   3'- gCGUGgCCGUGACGA---UUCgCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 2490 0.67 0.449544
Target:  5'- uCGUcCgGGCGgUGCUucuucAGGUGCGACAUg -3'
miRNA:   3'- -GCGuGgCCGUgACGA-----UUCGCGCUGUA- -5'
33032 5' -57.3 NC_007497.1 + 2491 1.05 0.000765
Target:  5'- gCGCACCGGCACUGCUAAGCGCGACAUc -3'
miRNA:   3'- -GCGUGGCCGUGACGAUUCGCGCUGUA- -5'
33032 5' -57.3 NC_007497.1 + 2549 0.65 0.529768
Target:  5'- gCGCGCCGGCGgccgcggcgcauccUUGCgauuuccGAGCGCGuagauGCGUg -3'
miRNA:   3'- -GCGUGGCCGU--------------GACGa------UUCGCGC-----UGUA- -5'
33032 5' -57.3 NC_007497.1 + 3211 0.69 0.356261
Target:  5'- gCGCugGCCGGCGCcGUccGAGCGCGAgAc -3'
miRNA:   3'- -GCG--UGGCCGUGaCGa-UUCGCGCUgUa -5'
33032 5' -57.3 NC_007497.1 + 3388 0.68 0.391912
Target:  5'- gCGCGCgGGCGauaUGCcuuGCGCGGCu- -3'
miRNA:   3'- -GCGUGgCCGUg--ACGauuCGCGCUGua -5'
33032 5' -57.3 NC_007497.1 + 4193 0.67 0.469771
Target:  5'- cCGCGagCGGUuuaugGCUGCgguGCGCGACGc -3'
miRNA:   3'- -GCGUg-GCCG-----UGACGauuCGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 4911 0.69 0.331057
Target:  5'- cCGCACCGGCcaGCgGCUuuucAGUGCGAa-- -3'
miRNA:   3'- -GCGUGGCCG--UGaCGAu---UCGCGCUgua -5'
33032 5' -57.3 NC_007497.1 + 5818 0.67 0.448545
Target:  5'- cCGC-CCGGCAgCUucgucgGCUgacgagcGAGCGCGGCGa -3'
miRNA:   3'- -GCGuGGCCGU-GA------CGA-------UUCGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 8804 0.68 0.373798
Target:  5'- uGCGCCGGUAUcGCUcuAAGCaauguuGCGACGg -3'
miRNA:   3'- gCGUGGCCGUGaCGA--UUCG------CGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 19872 0.66 0.489408
Target:  5'- uGCACCGcGCugaucugGCUGUUGaucGGUGCGACc- -3'
miRNA:   3'- gCGUGGC-CG-------UGACGAU---UCGCGCUGua -5'
33032 5' -57.3 NC_007497.1 + 21110 0.69 0.356261
Target:  5'- uGUGCgGGUACUGCgggcGCGCGAUg- -3'
miRNA:   3'- gCGUGgCCGUGACGauu-CGCGCUGua -5'
33032 5' -57.3 NC_007497.1 + 23121 0.68 0.382784
Target:  5'- uCGCGCUcGCACUGCU-GGC-CGGCGa -3'
miRNA:   3'- -GCGUGGcCGUGACGAuUCGcGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 23189 0.68 0.401181
Target:  5'- uCGCcgGCCaGCAgUGC-GAGCGCGACu- -3'
miRNA:   3'- -GCG--UGGcCGUgACGaUUCGCGCUGua -5'
33032 5' -57.3 NC_007497.1 + 23600 0.76 0.115561
Target:  5'- cCGUauuGCCGuaucuccuggucGCGCUGCUGGGCGCGGCGg -3'
miRNA:   3'- -GCG---UGGC------------CGUGACGAUUCGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 23863 0.7 0.302577
Target:  5'- gCGCGCgCGGCACUcauccggcgugaagcGCUGgccGGCGCGcACGUc -3'
miRNA:   3'- -GCGUG-GCCGUGA---------------CGAU---UCGCGC-UGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.