Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33032 | 5' | -57.3 | NC_007497.1 | + | 399 | 0.73 | 0.186113 |
Target: 5'- gCGCGCC-GCACUGCUGcucuugccAGCGCGcCAc -3' miRNA: 3'- -GCGUGGcCGUGACGAU--------UCGCGCuGUa -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 2549 | 0.65 | 0.529768 |
Target: 5'- gCGCGCCGGCGgccgcggcgcauccUUGCgauuuccGAGCGCGuagauGCGUg -3' miRNA: 3'- -GCGUGGCCGU--------------GACGa------UUCGCGC-----UGUA- -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 44552 | 0.66 | 0.522235 |
Target: 5'- gGCGCCGGC--UGCUGAGacugauCGcCGGCAUu -3' miRNA: 3'- gCGUGGCCGugACGAUUC------GC-GCUGUA- -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 27095 | 0.66 | 0.480057 |
Target: 5'- cCGCGCCGGCA--GCgGAGCG-GAUAc -3' miRNA: 3'- -GCGUGGCCGUgaCGaUUCGCgCUGUa -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 2490 | 0.67 | 0.449544 |
Target: 5'- uCGUcCgGGCGgUGCUucuucAGGUGCGACAUg -3' miRNA: 3'- -GCGuGgCCGUgACGA-----UUCGCGCUGUA- -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 5818 | 0.67 | 0.448545 |
Target: 5'- cCGC-CCGGCAgCUucgucgGCUgacgagcGAGCGCGGCGa -3' miRNA: 3'- -GCGuGGCCGU-GA------CGA-------UUCGCGCUGUa -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 38050 | 0.67 | 0.428833 |
Target: 5'- uGCGauacCCGGCGaauccuuCUGCuUGAGCGCGGCc- -3' miRNA: 3'- gCGU----GGCCGU-------GACG-AUUCGCGCUGua -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 24504 | 0.68 | 0.410588 |
Target: 5'- gCGauaACUGGCGCUGCguacGCGCGGgAUu -3' miRNA: 3'- -GCg--UGGCCGUGACGauu-CGCGCUgUA- -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 3388 | 0.68 | 0.391912 |
Target: 5'- gCGCGCgGGCGauaUGCcuuGCGCGGCu- -3' miRNA: 3'- -GCGUGgCCGUg--ACGauuCGCGCUGua -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 23121 | 0.68 | 0.382784 |
Target: 5'- uCGCGCUcGCACUGCU-GGC-CGGCGa -3' miRNA: 3'- -GCGUGGcCGUGACGAuUCGcGCUGUa -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 21110 | 0.69 | 0.356261 |
Target: 5'- uGUGCgGGUACUGCgggcGCGCGAUg- -3' miRNA: 3'- gCGUGgCCGUGACGauu-CGCGCUGua -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 26769 | 0.73 | 0.191272 |
Target: 5'- cCGuCACCGGcCGCUGCUGAaucuGCGCGcCGUc -3' miRNA: 3'- -GC-GUGGCC-GUGACGAUU----CGCGCuGUA- -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 27885 | 0.7 | 0.284661 |
Target: 5'- gCGCACCGGgAcCUGCgagaacGAGCGCG-CGUc -3' miRNA: 3'- -GCGUGGCCgU-GACGa-----UUCGCGCuGUA- -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 35481 | 0.7 | 0.292022 |
Target: 5'- aGCGCCGGCAUUcCgcAGCGCGuCGa -3' miRNA: 3'- gCGUGGCCGUGAcGauUCGCGCuGUa -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 23863 | 0.7 | 0.302577 |
Target: 5'- gCGCGCgCGGCACUcauccggcgugaagcGCUGgccGGCGCGcACGUc -3' miRNA: 3'- -GCGUG-GCCGUGA---------------CGAU---UCGCGC-UGUA- -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 2036 | 0.69 | 0.331057 |
Target: 5'- gCGUACCGGCGCgguuCUGAucgagccauGCGUGACAc -3' miRNA: 3'- -GCGUGGCCGUGac--GAUU---------CGCGCUGUa -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 4911 | 0.69 | 0.331057 |
Target: 5'- cCGCACCGGCcaGCgGCUuuucAGUGCGAa-- -3' miRNA: 3'- -GCGUGGCCG--UGaCGAu---UCGCGCUgua -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 2435 | 0.69 | 0.33931 |
Target: 5'- aGUGCCGGUGCgccGCUGGgcguucGCGCGGCGa -3' miRNA: 3'- gCGUGGCCGUGa--CGAUU------CGCGCUGUa -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 27176 | 0.66 | 0.526534 |
Target: 5'- gCGCAUCGGCggccguauccgcuccGCUGCc-GGCGCGGu-- -3' miRNA: 3'- -GCGUGGCCG---------------UGACGauUCGCGCUgua -5' |
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33032 | 5' | -57.3 | NC_007497.1 | + | 23600 | 0.76 | 0.115561 |
Target: 5'- cCGUauuGCCGuaucuccuggucGCGCUGCUGGGCGCGGCGg -3' miRNA: 3'- -GCG---UGGC------------CGUGACGAUUCGCGCUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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