Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33033 | 3' | -63.7 | NC_007497.1 | + | 15301 | 0.67 | 0.212709 |
Target: 5'- -cGGGAUGCGCCacaGG-CGCgGGgGCu -3' miRNA: 3'- guUCCUACGCGGcg-CCgGCGgCCgCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 15336 | 0.75 | 0.056836 |
Target: 5'- --uGGAUGCGCgccuCGCGGCgcucgGCCGGCGUc -3' miRNA: 3'- guuCCUACGCG----GCGCCGg----CGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 16127 | 0.69 | 0.177648 |
Target: 5'- --uGGAUGCGgCGCauGGCCGagcauggaaaCGGCGUu -3' miRNA: 3'- guuCCUACGCgGCG--CCGGCg---------GCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 16329 | 0.74 | 0.075028 |
Target: 5'- --cGGA-GCGCgC-CGGCCGUCGGCGUa -3' miRNA: 3'- guuCCUaCGCG-GcGCCGGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 16854 | 0.68 | 0.192 |
Target: 5'- gCGcuGAUGCggGCUGCucGuCCGCCGGCGCg -3' miRNA: 3'- -GUucCUACG--CGGCGc-C-GGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 17095 | 0.7 | 0.132889 |
Target: 5'- ---aGAUGCGgCGCGGCCugcuugccaGCCuGCGCa -3' miRNA: 3'- guucCUACGCgGCGCCGG---------CGGcCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 17196 | 0.69 | 0.168617 |
Target: 5'- aGAGGAaucGCGgccgccCCGCaGCCGCCcGCGCa -3' miRNA: 3'- gUUCCUa--CGC------GGCGcCGGCGGcCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 19295 | 0.67 | 0.218179 |
Target: 5'- -cAGuAUGCGCaGCGGCCGUCgaacauuuGGCGUa -3' miRNA: 3'- guUCcUACGCGgCGCCGGCGG--------CCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 21037 | 0.66 | 0.286529 |
Target: 5'- aCGAuGA-GCGagCGCGGCCGCCGGa-- -3' miRNA: 3'- -GUUcCUaCGCg-GCGCCGGCGGCCgcg -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 21506 | 0.73 | 0.086106 |
Target: 5'- uCGAGc--GCGCCGUGugaauGCUGCCGGCGCc -3' miRNA: 3'- -GUUCcuaCGCGGCGC-----CGGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 23220 | 0.72 | 0.096073 |
Target: 5'- uCGAGG--GCGUCGcCGGCUGCCGG-GCu -3' miRNA: 3'- -GUUCCuaCGCGGC-GCCGGCGGCCgCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 23570 | 0.72 | 0.093483 |
Target: 5'- --uGGgcGCgGCgGCGGgCGCCGGCGUc -3' miRNA: 3'- guuCCuaCG-CGgCGCCgGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 23619 | 0.71 | 0.113088 |
Target: 5'- --cGGGca-GCaCGCGGCCGCCGGcCGUg -3' miRNA: 3'- guuCCUacgCG-GCGCCGGCGGCC-GCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 25876 | 0.66 | 0.253557 |
Target: 5'- cCAGGcGAagGCGaacgaaaaUGCGGCCGCCGugcagaccgucGCGCa -3' miRNA: 3'- -GUUC-CUa-CGCg-------GCGCCGGCGGC-----------CGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 27121 | 0.68 | 0.197005 |
Target: 5'- cCGccGAUGCGCCGCc-CCGCCuuGCGCg -3' miRNA: 3'- -GUucCUACGCGGCGccGGCGGc-CGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 27184 | 0.79 | 0.027111 |
Target: 5'- gCGGGGcgGCGCaucgGCGGCCguauccgcuccgcuGCCGGCGCg -3' miRNA: 3'- -GUUCCuaCGCGg---CGCCGG--------------CGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 28346 | 0.67 | 0.218179 |
Target: 5'- --cGGAUGCGCCuuGGgUGCggcaGGUGCa -3' miRNA: 3'- guuCCUACGCGGcgCCgGCGg---CCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 28620 | 0.67 | 0.212709 |
Target: 5'- gGAGGcgGCgGCgGCGGCgguggagaguCGCCGGacaGCc -3' miRNA: 3'- gUUCCuaCG-CGgCGCCG----------GCGGCCg--CG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 29629 | 0.69 | 0.17308 |
Target: 5'- --cGGAUaugucGCGCCGCuguauGGCCGCgaauuucugcaCGGCGUg -3' miRNA: 3'- guuCCUA-----CGCGGCG-----CCGGCG-----------GCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 31886 | 0.66 | 0.259892 |
Target: 5'- --uGGAgcCGCCGCuccGGCCGCaGGgGCg -3' miRNA: 3'- guuCCUacGCGGCG---CCGGCGgCCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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