miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33033 3' -63.7 NC_007497.1 + 1246 0.66 0.27295
Target:  5'- uCGGGGAUGgGCCucgucGgGGUCGauGGUGCu -3'
miRNA:   3'- -GUUCCUACgCGG-----CgCCGGCggCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 2440 0.67 0.218179
Target:  5'- ---cGGUGCGCCGCuGGgCGUUcGCGCg -3'
miRNA:   3'- guucCUACGCGGCG-CCgGCGGcCGCG- -5'
33033 3' -63.7 NC_007497.1 + 2542 0.75 0.056836
Target:  5'- -cGGGcgugcGCGCCgGCGGCCG-CGGCGCa -3'
miRNA:   3'- guUCCua---CGCGG-CGCCGGCgGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 2621 1.1 0.000094
Target:  5'- gCAAGGAUGCGCCGCGGCCGCCGGCGCg -3'
miRNA:   3'- -GUUCCUACGCGGCGCCGGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 3402 0.66 0.279674
Target:  5'- --uGGA-GCGCCGCacGCCGauggaCGGCGa -3'
miRNA:   3'- guuCCUaCGCGGCGc-CGGCg----GCCGCg -5'
33033 3' -63.7 NC_007497.1 + 3545 0.66 0.279674
Target:  5'- ---cGGUGCGCUuuGUGGCCGUgaaggCGGcCGCg -3'
miRNA:   3'- guucCUACGCGG--CGCCGGCG-----GCC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 3862 0.68 0.202124
Target:  5'- ---cGAUGCGCCGcCGGUucucaCGCCuGCGUa -3'
miRNA:   3'- guucCUACGCGGC-GCCG-----GCGGcCGCG- -5'
33033 3' -63.7 NC_007497.1 + 4104 0.73 0.079285
Target:  5'- uCGGGGA--CGCgGCGGCCGagacggcaCGGCGCg -3'
miRNA:   3'- -GUUCCUacGCGgCGCCGGCg-------GCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 4965 0.66 0.279674
Target:  5'- --uGGc--CGgUGCGGCCGUCGGCGg -3'
miRNA:   3'- guuCCuacGCgGCGCCGGCGGCCGCg -5'
33033 3' -63.7 NC_007497.1 + 8691 0.67 0.212709
Target:  5'- -cGGGcgGgGCgCGuCGGCCGCCcGGuCGUg -3'
miRNA:   3'- guUCCuaCgCG-GC-GCCGGCGG-CC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 9103 0.66 0.259892
Target:  5'- -uGGGGUGCG-CG-GGCUGC-GGUGCa -3'
miRNA:   3'- guUCCUACGCgGCgCCGGCGgCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 13620 0.67 0.223767
Target:  5'- uGAGGAagagcggGcCGCCGCaugGGCCGCCgcacgGGcCGCa -3'
miRNA:   3'- gUUCCUa------C-GCGGCG---CCGGCGG-----CC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 13672 0.67 0.212709
Target:  5'- gCAGGGGa-CGCCGCaggGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUUCCUacGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 13738 0.67 0.212709
Target:  5'- gCAGGGGa-CGCCGCaggGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUUCCUacGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 13771 0.66 0.253557
Target:  5'- gCAuGGGU-CGCCGCaggGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUuCCUAcGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 13804 0.67 0.212709
Target:  5'- gCAGGGGc-CGCCGCaugGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUUCCUacGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 13849 0.75 0.060095
Target:  5'- gCAGGGG-GCGCCGCaugGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUUCCUaCGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 13906 0.67 0.212709
Target:  5'- gCAuGGGU-CGCCGCaggGGCCGCCgcacgGGaCGCa -3'
miRNA:   3'- -GUuCCUAcGCGGCG---CCGGCGG-----CC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 14196 0.73 0.081499
Target:  5'- --cGGcguucAUGCGCuCGCcuucgagcaGGCCGCCGGCGUc -3'
miRNA:   3'- guuCC-----UACGCG-GCG---------CCGGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 14381 0.67 0.247348
Target:  5'- ---cGAUGCagaGCCGCgGGCCGCUcgcuGGCGa -3'
miRNA:   3'- guucCUACG---CGGCG-CCGGCGG----CCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.