miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33033 3' -63.7 NC_007497.1 + 13771 0.66 0.253557
Target:  5'- gCAuGGGU-CGCCGCaggGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUuCCUAcGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 27121 0.68 0.197005
Target:  5'- cCGccGAUGCGCCGCc-CCGCCuuGCGCg -3'
miRNA:   3'- -GUucCUACGCGGCGccGGCGGc-CGCG- -5'
33033 3' -63.7 NC_007497.1 + 44639 0.68 0.207359
Target:  5'- aCAAGGc-GCGaCC-CGGCCGCCGaUGCu -3'
miRNA:   3'- -GUUCCuaCGC-GGcGCCGGCGGCcGCG- -5'
33033 3' -63.7 NC_007497.1 + 13672 0.67 0.212709
Target:  5'- gCAGGGGa-CGCCGCaggGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUUCCUacGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 13738 0.67 0.212709
Target:  5'- gCAGGGGa-CGCCGCaggGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUUCCUacGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 13804 0.67 0.212709
Target:  5'- gCAGGGGc-CGCCGCaugGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUUCCUacGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 13906 0.67 0.212709
Target:  5'- gCAuGGGU-CGCCGCaggGGCCGCCgcacgGGaCGCa -3'
miRNA:   3'- -GUuCCUAcGCGGCG---CCGGCGG-----CC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 2440 0.67 0.218179
Target:  5'- ---cGGUGCGCCGCuGGgCGUUcGCGCg -3'
miRNA:   3'- guucCUACGCGGCG-CCgGCGGcCGCG- -5'
33033 3' -63.7 NC_007497.1 + 13620 0.67 0.223767
Target:  5'- uGAGGAagagcggGcCGCCGCaugGGCCGCCgcacgGGcCGCa -3'
miRNA:   3'- gUUCCUa------C-GCGGCG---CCGGCGG-----CC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 40115 0.68 0.197005
Target:  5'- -cGGGAUcGCGCaGCGGCuucaCGCCGuucGCGCc -3'
miRNA:   3'- guUCCUA-CGCGgCGCCG----GCGGC---CGCG- -5'
33033 3' -63.7 NC_007497.1 + 16127 0.69 0.177648
Target:  5'- --uGGAUGCGgCGCauGGCCGagcauggaaaCGGCGUu -3'
miRNA:   3'- guuCCUACGCgGCG--CCGGCg---------GCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 17196 0.69 0.168617
Target:  5'- aGAGGAaucGCGgccgccCCGCaGCCGCCcGCGCa -3'
miRNA:   3'- gUUCCUa--CGC------GGCGcCGGCGGcCGCG- -5'
33033 3' -63.7 NC_007497.1 + 13849 0.75 0.060095
Target:  5'- gCAGGGG-GCGCCGCaugGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUUCCUaCGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 34572 0.74 0.072982
Target:  5'- gCGAGccUGCGCgGgCGGCCGCCGuuuGCGCg -3'
miRNA:   3'- -GUUCcuACGCGgC-GCCGGCGGC---CGCG- -5'
33033 3' -63.7 NC_007497.1 + 35955 0.73 0.079285
Target:  5'- --uGGAUGCcgaacGCCGCGGCCG-CGGCu- -3'
miRNA:   3'- guuCCUACG-----CGGCGCCGGCgGCCGcg -5'
33033 3' -63.7 NC_007497.1 + 23220 0.72 0.096073
Target:  5'- uCGAGG--GCGUCGcCGGCUGCCGG-GCu -3'
miRNA:   3'- -GUUCCuaCGCGGC-GCCGGCGGCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 23619 0.71 0.113088
Target:  5'- --cGGGca-GCaCGCGGCCGCCGGcCGUg -3'
miRNA:   3'- guuCCUacgCG-GCGCCGGCGGCC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 34635 0.71 0.113088
Target:  5'- --cGGcgGuCGCCGCGGUgGCgccucguuCGGCGCg -3'
miRNA:   3'- guuCCuaC-GCGGCGCCGgCG--------GCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 35081 0.7 0.136485
Target:  5'- --cGGccUGCGCCGCGaccuccGCCGCCuGUGCg -3'
miRNA:   3'- guuCCu-ACGCGGCGC------CGGCGGcCGCG- -5'
33033 3' -63.7 NC_007497.1 + 32442 0.69 0.159999
Target:  5'- --cGGccccGUGaCGUGGCCGCCGGuCGCa -3'
miRNA:   3'- guuCCua--CGCgGCGCCGGCGGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.