Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33033 | 3' | -63.7 | NC_007497.1 | + | 2621 | 1.1 | 0.000094 |
Target: 5'- gCAAGGAUGCGCCGCGGCCGCCGGCGCg -3' miRNA: 3'- -GUUCCUACGCGGCGCCGGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 34667 | 0.71 | 0.113088 |
Target: 5'- gCAAcGGAgcGUGCCGCGGUCGCgcaaaCGGCGg -3' miRNA: 3'- -GUU-CCUa-CGCGGCGCCGGCG-----GCCGCg -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 29629 | 0.69 | 0.17308 |
Target: 5'- --cGGAUaugucGCGCCGCuguauGGCCGCgaauuucugcaCGGCGUg -3' miRNA: 3'- guuCCUA-----CGCGGCG-----CCGGCG-----------GCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 3545 | 0.66 | 0.279674 |
Target: 5'- ---cGGUGCGCUuuGUGGCCGUgaaggCGGcCGCg -3' miRNA: 3'- guucCUACGCGG--CGCCGGCG-----GCC-GCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 38226 | 0.79 | 0.027342 |
Target: 5'- -cAGGc-GCGCCaCGGUCGCCGGCGCg -3' miRNA: 3'- guUCCuaCGCGGcGCCGGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 34767 | 0.76 | 0.049422 |
Target: 5'- aAAGGGU-C-UCGCGGCCGCCGaGCGCg -3' miRNA: 3'- gUUCCUAcGcGGCGCCGGCGGC-CGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 16329 | 0.74 | 0.075028 |
Target: 5'- --cGGA-GCGCgC-CGGCCGUCGGCGUa -3' miRNA: 3'- guuCCUaCGCG-GcGCCGGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 4104 | 0.73 | 0.079285 |
Target: 5'- uCGGGGA--CGCgGCGGCCGagacggcaCGGCGCg -3' miRNA: 3'- -GUUCCUacGCGgCGCCGGCg-------GCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 23570 | 0.72 | 0.093483 |
Target: 5'- --uGGgcGCgGCgGCGGgCGCCGGCGUc -3' miRNA: 3'- guuCCuaCG-CGgCGCCgGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 34087 | 0.71 | 0.110068 |
Target: 5'- --cGGcagGgGCCGCGGCCGaCaggGGCGCg -3' miRNA: 3'- guuCCua-CgCGGCGCCGGC-Gg--CCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 35052 | 0.72 | 0.096073 |
Target: 5'- aCAcGGAUGCGaaGCuGGCCGa-GGCGCg -3' miRNA: 3'- -GUuCCUACGCggCG-CCGGCggCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 21506 | 0.73 | 0.086106 |
Target: 5'- uCGAGc--GCGCCGUGugaauGCUGCCGGCGCc -3' miRNA: 3'- -GUUCcuaCGCGGCGC-----CGGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 33779 | 0.84 | 0.012325 |
Target: 5'- aCAAGGAUGCGaagGCGGaaGCCGGCGCa -3' miRNA: 3'- -GUUCCUACGCgg-CGCCggCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 35549 | 0.72 | 0.104254 |
Target: 5'- ---cGAcGCGCUGCGGaauGCCGGCGCu -3' miRNA: 3'- guucCUaCGCGGCGCCgg-CGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 32562 | 0.8 | 0.025113 |
Target: 5'- --cGGAUgGCGUCGCGGCCgccGCCGGCGg -3' miRNA: 3'- guuCCUA-CGCGGCGCCGG---CGGCCGCg -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 14196 | 0.73 | 0.081499 |
Target: 5'- --cGGcguucAUGCGCuCGCcuucgagcaGGCCGCCGGCGUc -3' miRNA: 3'- guuCC-----UACGCG-GCG---------CCGGCGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 36185 | 0.72 | 0.107124 |
Target: 5'- gGAGGAUGCGUgggcuggcguCGaCGGCCGgCGGCu- -3' miRNA: 3'- gUUCCUACGCG----------GC-GCCGGCgGCCGcg -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 17095 | 0.7 | 0.132889 |
Target: 5'- ---aGAUGCGgCGCGGCCugcuugccaGCCuGCGCa -3' miRNA: 3'- guucCUACGCgGCGCCGG---------CGGcCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 27184 | 0.79 | 0.027111 |
Target: 5'- gCGGGGcgGCGCaucgGCGGCCguauccgcuccgcuGCCGGCGCg -3' miRNA: 3'- -GUUCCuaCGCGg---CGCCGG--------------CGGCCGCG- -5' |
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33033 | 3' | -63.7 | NC_007497.1 | + | 15336 | 0.75 | 0.056836 |
Target: 5'- --uGGAUGCGCgccuCGCGGCgcucgGCCGGCGUc -3' miRNA: 3'- guuCCUACGCG----GCGCCGg----CGGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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