miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33033 3' -63.7 NC_007497.1 + 2621 1.1 0.000094
Target:  5'- gCAAGGAUGCGCCGCGGCCGCCGGCGCg -3'
miRNA:   3'- -GUUCCUACGCGGCGCCGGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 33779 0.84 0.012325
Target:  5'- aCAAGGAUGCGaagGCGGaaGCCGGCGCa -3'
miRNA:   3'- -GUUCCUACGCgg-CGCCggCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 32562 0.8 0.025113
Target:  5'- --cGGAUgGCGUCGCGGCCgccGCCGGCGg -3'
miRNA:   3'- guuCCUA-CGCGGCGCCGG---CGGCCGCg -5'
33033 3' -63.7 NC_007497.1 + 27184 0.79 0.027111
Target:  5'- gCGGGGcgGCGCaucgGCGGCCguauccgcuccgcuGCCGGCGCg -3'
miRNA:   3'- -GUUCCuaCGCGg---CGCCGG--------------CGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 38226 0.79 0.027342
Target:  5'- -cAGGc-GCGCCaCGGUCGCCGGCGCg -3'
miRNA:   3'- guUCCuaCGCGGcGCCGGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 34767 0.76 0.049422
Target:  5'- aAAGGGU-C-UCGCGGCCGCCGaGCGCg -3'
miRNA:   3'- gUUCCUAcGcGGCGCCGGCGGC-CGCG- -5'
33033 3' -63.7 NC_007497.1 + 15336 0.75 0.056836
Target:  5'- --uGGAUGCGCgccuCGCGGCgcucgGCCGGCGUc -3'
miRNA:   3'- guuCCUACGCG----GCGCCGg----CGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 2542 0.75 0.056836
Target:  5'- -cGGGcgugcGCGCCgGCGGCCG-CGGCGCa -3'
miRNA:   3'- guUCCua---CGCGG-CGCCGGCgGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 13849 0.75 0.060095
Target:  5'- gCAGGGG-GCGCCGCaugGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUUCCUaCGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 34572 0.74 0.072982
Target:  5'- gCGAGccUGCGCgGgCGGCCGCCGuuuGCGCg -3'
miRNA:   3'- -GUUCcuACGCGgC-GCCGGCGGC---CGCG- -5'
33033 3' -63.7 NC_007497.1 + 16329 0.74 0.075028
Target:  5'- --cGGA-GCGCgC-CGGCCGUCGGCGUa -3'
miRNA:   3'- guuCCUaCGCG-GcGCCGGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 4104 0.73 0.079285
Target:  5'- uCGGGGA--CGCgGCGGCCGagacggcaCGGCGCg -3'
miRNA:   3'- -GUUCCUacGCGgCGCCGGCg-------GCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 35955 0.73 0.079285
Target:  5'- --uGGAUGCcgaacGCCGCGGCCG-CGGCu- -3'
miRNA:   3'- guuCCUACG-----CGGCGCCGGCgGCCGcg -5'
33033 3' -63.7 NC_007497.1 + 14196 0.73 0.081499
Target:  5'- --cGGcguucAUGCGCuCGCcuucgagcaGGCCGCCGGCGUc -3'
miRNA:   3'- guuCC-----UACGCG-GCG---------CCGGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 21506 0.73 0.086106
Target:  5'- uCGAGc--GCGCCGUGugaauGCUGCCGGCGCc -3'
miRNA:   3'- -GUUCcuaCGCGGCGC-----CGGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 23570 0.72 0.093483
Target:  5'- --uGGgcGCgGCgGCGGgCGCCGGCGUc -3'
miRNA:   3'- guuCCuaCG-CGgCGCCgGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 23220 0.72 0.096073
Target:  5'- uCGAGG--GCGUCGcCGGCUGCCGG-GCu -3'
miRNA:   3'- -GUUCCuaCGCGGC-GCCGGCGGCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 36037 0.72 0.096073
Target:  5'- --cGGAUacGCggaaGCCGCGGCCGC-GGCGUu -3'
miRNA:   3'- guuCCUA--CG----CGGCGCCGGCGgCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 35052 0.72 0.096073
Target:  5'- aCAcGGAUGCGaaGCuGGCCGa-GGCGCg -3'
miRNA:   3'- -GUuCCUACGCggCG-CCGGCggCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 35549 0.72 0.104254
Target:  5'- ---cGAcGCGCUGCGGaauGCCGGCGCu -3'
miRNA:   3'- guucCUaCGCGGCGCCgg-CGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.