miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33033 3' -63.7 NC_007497.1 + 36682 0.67 0.241267
Target:  5'- aCAGcGAUGC-CCaaGCGGUCGCCgaGGCGUa -3'
miRNA:   3'- -GUUcCUACGcGG--CGCCGGCGG--CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 19295 0.67 0.218179
Target:  5'- -cAGuAUGCGCaGCGGCCGUCgaacauuuGGCGUa -3'
miRNA:   3'- guUCcUACGCGgCGCCGGCGG--------CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 3862 0.68 0.202124
Target:  5'- ---cGAUGCGCCGcCGGUucucaCGCCuGCGUa -3'
miRNA:   3'- guucCUACGCGGC-GCCG-----GCGGcCGCG- -5'
33033 3' -63.7 NC_007497.1 + 38115 0.69 0.177648
Target:  5'- gAAGGAUuCGCCG-GGuaucgcaaCCGCCGGUGUc -3'
miRNA:   3'- gUUCCUAcGCGGCgCC--------GGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 1246 0.66 0.27295
Target:  5'- uCGGGGAUGgGCCucgucGgGGUCGauGGUGCu -3'
miRNA:   3'- -GUUCCUACgCGG-----CgCCGGCggCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 31886 0.66 0.259892
Target:  5'- --uGGAgcCGCCGCuccGGCCGCaGGgGCg -3'
miRNA:   3'- guuCCUacGCGGCG---CCGGCGgCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 8691 0.67 0.212709
Target:  5'- -cGGGcgGgGCgCGuCGGCCGCCcGGuCGUg -3'
miRNA:   3'- guUCCuaCgCG-GC-GCCGGCGG-CC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 29629 0.69 0.17308
Target:  5'- --cGGAUaugucGCGCCGCuguauGGCCGCgaauuucugcaCGGCGUg -3'
miRNA:   3'- guuCCUA-----CGCGGCG-----CCGGCG-----------GCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 33868 0.66 0.259892
Target:  5'- gAAGGggGCGaaCGCaGCCGa-GGCGCg -3'
miRNA:   3'- gUUCCuaCGCg-GCGcCGGCggCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 17095 0.7 0.132889
Target:  5'- ---aGAUGCGgCGCGGCCugcuugccaGCCuGCGCa -3'
miRNA:   3'- guucCUACGCgGCGCCGG---------CGGcCGCG- -5'
33033 3' -63.7 NC_007497.1 + 28346 0.67 0.218179
Target:  5'- --cGGAUGCGCCuuGGgUGCggcaGGUGCa -3'
miRNA:   3'- guuCCUACGCGGcgCCgGCGg---CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 14381 0.67 0.247348
Target:  5'- ---cGAUGCagaGCCGCgGGCCGCUcgcuGGCGa -3'
miRNA:   3'- guucCUACG---CGGCG-CCGGCGG----CCGCg -5'
33033 3' -63.7 NC_007497.1 + 15301 0.67 0.212709
Target:  5'- -cGGGAUGCGCCacaGG-CGCgGGgGCu -3'
miRNA:   3'- guUCCUACGCGGcg-CCgGCGgCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 28620 0.67 0.212709
Target:  5'- gGAGGcgGCgGCgGCGGCgguggagaguCGCCGGacaGCc -3'
miRNA:   3'- gUUCCuaCG-CGgCGCCG----------GCGGCCg--CG- -5'
33033 3' -63.7 NC_007497.1 + 16854 0.68 0.192
Target:  5'- gCGcuGAUGCggGCUGCucGuCCGCCGGCGCg -3'
miRNA:   3'- -GUucCUACG--CGGCGc-C-GGCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 43158 0.68 0.182323
Target:  5'- --uGGA-GCGCCGCaaagaGauugCGCCGGCGCu -3'
miRNA:   3'- guuCCUaCGCGGCGc----Cg---GCGGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 3545 0.66 0.279674
Target:  5'- ---cGGUGCGCUuuGUGGCCGUgaaggCGGcCGCg -3'
miRNA:   3'- guucCUACGCGG--CGCCGGCG-----GCC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 3402 0.66 0.279674
Target:  5'- --uGGA-GCGCCGCacGCCGauggaCGGCGa -3'
miRNA:   3'- guuCCUaCGCGGCGc-CGGCg----GCCGCg -5'
33033 3' -63.7 NC_007497.1 + 32836 0.66 0.266356
Target:  5'- -cAGGAgucCGCCGagaacGCCGCUgGGCGCg -3'
miRNA:   3'- guUCCUac-GCGGCgc---CGGCGG-CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 43020 0.66 0.266356
Target:  5'- aCAAGGccgGCGUCGaccCGGCCGguaUCGGgGCu -3'
miRNA:   3'- -GUUCCua-CGCGGC---GCCGGC---GGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.