Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33036 | 5' | -51.5 | NC_007497.1 | + | 26313 | 0.68 | 0.773613 |
Target: 5'- uGGCGucgu-CGCGgcucggcGUCCGGCUGUACc -3' miRNA: 3'- -CCGUuacuuGCGU-------UAGGCCGGCAUGc -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 36112 | 0.68 | 0.764187 |
Target: 5'- cGGCcGUcGAcgccagcccACGCAuccUCCGGUCGUACu -3' miRNA: 3'- -CCGuUA-CU---------UGCGUu--AGGCCGGCAUGc -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 40852 | 0.69 | 0.720999 |
Target: 5'- cGGCAAUGGcaaagcuguauGCGCAA-CgGGCCG-GCa -3' miRNA: 3'- -CCGUUACU-----------UGCGUUaGgCCGGCaUGc -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 15232 | 0.69 | 0.687573 |
Target: 5'- cGGCGA-GAGCGCGcgCUGGauGUAUGc -3' miRNA: 3'- -CCGUUaCUUGCGUuaGGCCggCAUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 23620 | 0.69 | 0.687573 |
Target: 5'- gGGCAGc--ACGCGGccgCCGGCCGUGa- -3' miRNA: 3'- -CCGUUacuUGCGUUa--GGCCGGCAUgc -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 16339 | 0.7 | 0.664983 |
Target: 5'- cGCuguUGAACggaGCGcgCCGGCCGUcgGCGu -3' miRNA: 3'- cCGuu-ACUUG---CGUuaGGCCGGCA--UGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 39338 | 0.71 | 0.619502 |
Target: 5'- cGCGugcuGCGCGAUCCGuacacggcgaaGCCGUACGu -3' miRNA: 3'- cCGUuacuUGCGUUAGGC-----------CGGCAUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 34858 | 0.71 | 0.608134 |
Target: 5'- cGCGGUcucGcGCGCGAUCaCGGCCGcaUACGg -3' miRNA: 3'- cCGUUA---CuUGCGUUAG-GCCGGC--AUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 35199 | 0.71 | 0.585475 |
Target: 5'- aGGCGcgGAGCgaucGCGAUgCGGCUGcgGCGa -3' miRNA: 3'- -CCGUuaCUUG----CGUUAgGCCGGCa-UGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 35769 | 0.73 | 0.507931 |
Target: 5'- aGGCGGUG-GCGCuGUCCGG-CGUAuCGg -3' miRNA: 3'- -CCGUUACuUGCGuUAGGCCgGCAU-GC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 26565 | 0.73 | 0.465587 |
Target: 5'- cGUGAUGAACGUGAcgucgcugCCGGCCGUcagcGCGg -3' miRNA: 3'- cCGUUACUUGCGUUa-------GGCCGGCA----UGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 17074 | 0.73 | 0.465587 |
Target: 5'- gGGCGGaaccGAugGCGAUcCCGGCCGgAUGg -3' miRNA: 3'- -CCGUUa---CUugCGUUA-GGCCGGCaUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 4607 | 0.78 | 0.264761 |
Target: 5'- gGGCGAaGGucgaucgUGCGGUCCGGUCGUGCGg -3' miRNA: 3'- -CCGUUaCUu------GCGUUAGGCCGGCAUGC- -5' |
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33036 | 5' | -51.5 | NC_007497.1 | + | 5750 | 1.11 | 0.001597 |
Target: 5'- uGGCAAUGAACGCAAUCCGGCCGUACGc -3' miRNA: 3'- -CCGUUACUUGCGUUAGGCCGGCAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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