Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33037 | 3' | -49.7 | NC_007497.1 | + | 6280 | 1.12 | 0.001996 |
Target: 5'- aGGUCAAUCCGAACAACGACACCCACAa -3' miRNA: 3'- -CCAGUUAGGCUUGUUGCUGUGGGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 36825 | 0.77 | 0.388355 |
Target: 5'- cGUCGAgCCGGACGACGACGaacagaCCGCGa -3' miRNA: 3'- cCAGUUaGGCUUGUUGCUGUg-----GGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 25667 | 0.77 | 0.397835 |
Target: 5'- uGGUCGAcCCGAACAACGGCgGCUCGa- -3' miRNA: 3'- -CCAGUUaGGCUUGUUGCUG-UGGGUgu -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 4601 | 0.76 | 0.437199 |
Target: 5'- aGGUCGaucgugcgGUCCGGucguGCGGCACCUACAa -3' miRNA: 3'- -CCAGU--------UAGGCUugu-UGCUGUGGGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 37353 | 0.74 | 0.565718 |
Target: 5'- cGGUCAgucGUCCGAgaucgacGCAACcACGCUCGCGa -3' miRNA: 3'- -CCAGU---UAGGCU-------UGUUGcUGUGGGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 23613 | 0.72 | 0.685996 |
Target: 5'- --cCAGUCCGGGCAGCacgcggccgccggccGugACCCACu -3' miRNA: 3'- ccaGUUAGGCUUGUUG---------------CugUGGGUGu -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 30032 | 0.71 | 0.704119 |
Target: 5'- -uUCAcgCCGAAcCGGCGuucGCACCCGCu -3' miRNA: 3'- ccAGUuaGGCUU-GUUGC---UGUGGGUGu -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 34651 | 0.71 | 0.715349 |
Target: 5'- cGGUCGcgCa-AACGGCGGcCGCCCGCGc -3' miRNA: 3'- -CCAGUuaGgcUUGUUGCU-GUGGGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 36762 | 0.7 | 0.769893 |
Target: 5'- cGUCGucGUCCG-GCu-CGACGCCCGCc -3' miRNA: 3'- cCAGU--UAGGCuUGuuGCUGUGGGUGu -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 35444 | 0.7 | 0.778302 |
Target: 5'- cGGUCAcaucgaccuugCCGAACAACGcgucgguacuaGCGCCgGCAu -3' miRNA: 3'- -CCAGUua---------GGCUUGUUGC-----------UGUGGgUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 37287 | 0.7 | 0.790716 |
Target: 5'- cGUCGAUCuCGGACGACuGAcCGCCCu-- -3' miRNA: 3'- cCAGUUAG-GCUUGUUG-CU-GUGGGugu -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 1199 | 0.69 | 0.800862 |
Target: 5'- --cCGAUCCGAGCGAUu-CAcCCCGCAg -3' miRNA: 3'- ccaGUUAGGCUUGUUGcuGU-GGGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 15185 | 0.69 | 0.810816 |
Target: 5'- uGUUGAgcUUCGggUAGCGGCGCgCCACGc -3' miRNA: 3'- cCAGUU--AGGCuuGUUGCUGUG-GGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 36818 | 0.69 | 0.820565 |
Target: 5'- cGGUCc--UCGAGCAGCGGCucGCgCACAg -3' miRNA: 3'- -CCAGuuaGGCUUGUUGCUG--UGgGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 25144 | 0.69 | 0.830097 |
Target: 5'- uGGUCGuauagcCCGAacgACAGCGgcucuaacgcauACACCCGCGu -3' miRNA: 3'- -CCAGUua----GGCU---UGUUGC------------UGUGGGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 36698 | 0.69 | 0.830097 |
Target: 5'- cGUCGcgaAUUCGGcgACAGCGAUGCCCAa- -3' miRNA: 3'- cCAGU---UAGGCU--UGUUGCUGUGGGUgu -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 16158 | 0.69 | 0.838482 |
Target: 5'- --aCGA-CCGAACGGCGgauugagccagacGCGCCCGCGc -3' miRNA: 3'- ccaGUUaGGCUUGUUGC-------------UGUGGGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 27137 | 0.69 | 0.839402 |
Target: 5'- uGUCGugUUGGACAA-GGCGCCCGCAg -3' miRNA: 3'- cCAGUuaGGCUUGUUgCUGUGGGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 29842 | 0.68 | 0.848468 |
Target: 5'- cGUCAcccgccgcuGUCCGcACGAUGA-GCCCGCAg -3' miRNA: 3'- cCAGU---------UAGGCuUGUUGCUgUGGGUGU- -5' |
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33037 | 3' | -49.7 | NC_007497.1 | + | 26070 | 0.68 | 0.857287 |
Target: 5'- aGUCGAUCggcuCGAGCAGauCGugGCCCAg- -3' miRNA: 3'- cCAGUUAG----GCUUGUU--GCugUGGGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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