miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33037 3' -49.7 NC_007497.1 + 23613 0.72 0.685996
Target:  5'- --cCAGUCCGGGCAGCacgcggccgccggccGugACCCACu -3'
miRNA:   3'- ccaGUUAGGCUUGUUG---------------CugUGGGUGu -5'
33037 3' -49.7 NC_007497.1 + 12288 0.66 0.939633
Target:  5'- cGGaCGAuUCCGAaaaACccgaugccaccgagGACGGCACCCGCc -3'
miRNA:   3'- -CCaGUU-AGGCU---UG--------------UUGCUGUGGGUGu -5'
33037 3' -49.7 NC_007497.1 + 29799 0.66 0.930187
Target:  5'- uGGUCGGUCgGAGuCGGCGcgacauuuCGCCCcgGCAa -3'
miRNA:   3'- -CCAGUUAGgCUU-GUUGCu-------GUGGG--UGU- -5'
33037 3' -49.7 NC_007497.1 + 795 0.66 0.930187
Target:  5'- cGGcaUCGAUCaCGc-CGACGGCGCCCGu- -3'
miRNA:   3'- -CC--AGUUAG-GCuuGUUGCUGUGGGUgu -5'
33037 3' -49.7 NC_007497.1 + 34510 0.66 0.930187
Target:  5'- cGUCAGgaugCCGGGCAGCccgccGAcCACCgACAa -3'
miRNA:   3'- cCAGUUa---GGCUUGUUG-----CU-GUGGgUGU- -5'
33037 3' -49.7 NC_007497.1 + 38024 0.67 0.889905
Target:  5'- -uUC-GUCCGAACAcgGACACCgGCGg -3'
miRNA:   3'- ccAGuUAGGCUUGUugCUGUGGgUGU- -5'
33037 3' -49.7 NC_007497.1 + 4586 0.68 0.865848
Target:  5'- cGUCGAUccgCCGAGCAucuucACGAUGUCCGCAg -3'
miRNA:   3'- cCAGUUA---GGCUUGU-----UGCUGUGGGUGU- -5'
33037 3' -49.7 NC_007497.1 + 26070 0.68 0.857287
Target:  5'- aGUCGAUCggcuCGAGCAGauCGugGCCCAg- -3'
miRNA:   3'- cCAGUUAG----GCUUGUU--GCugUGGGUgu -5'
33037 3' -49.7 NC_007497.1 + 29842 0.68 0.848468
Target:  5'- cGUCAcccgccgcuGUCCGcACGAUGA-GCCCGCAg -3'
miRNA:   3'- cCAGU---------UAGGCuUGUUGCUgUGGGUGU- -5'
33037 3' -49.7 NC_007497.1 + 30032 0.71 0.704119
Target:  5'- -uUCAcgCCGAAcCGGCGuucGCACCCGCu -3'
miRNA:   3'- ccAGUuaGGCUU-GUUGC---UGUGGGUGu -5'
33037 3' -49.7 NC_007497.1 + 36762 0.7 0.769893
Target:  5'- cGUCGucGUCCG-GCu-CGACGCCCGCc -3'
miRNA:   3'- cCAGU--UAGGCuUGuuGCUGUGGGUGu -5'
33037 3' -49.7 NC_007497.1 + 35444 0.7 0.778302
Target:  5'- cGGUCAcaucgaccuugCCGAACAACGcgucgguacuaGCGCCgGCAu -3'
miRNA:   3'- -CCAGUua---------GGCUUGUUGC-----------UGUGGgUGU- -5'
33037 3' -49.7 NC_007497.1 + 37287 0.7 0.790716
Target:  5'- cGUCGAUCuCGGACGACuGAcCGCCCu-- -3'
miRNA:   3'- cCAGUUAG-GCUUGUUG-CU-GUGGGugu -5'
33037 3' -49.7 NC_007497.1 + 1199 0.69 0.800862
Target:  5'- --cCGAUCCGAGCGAUu-CAcCCCGCAg -3'
miRNA:   3'- ccaGUUAGGCUUGUUGcuGU-GGGUGU- -5'
33037 3' -49.7 NC_007497.1 + 36818 0.69 0.820565
Target:  5'- cGGUCc--UCGAGCAGCGGCucGCgCACAg -3'
miRNA:   3'- -CCAGuuaGGCUUGUUGCUG--UGgGUGU- -5'
33037 3' -49.7 NC_007497.1 + 20855 0.66 0.94121
Target:  5'- -aUCAucGUCCGAACcGCGAgCACgCGCu -3'
miRNA:   3'- ccAGU--UAGGCUUGuUGCU-GUGgGUGu -5'
33037 3' -49.7 NC_007497.1 + 36825 0.77 0.388355
Target:  5'- cGUCGAgCCGGACGACGACGaacagaCCGCGa -3'
miRNA:   3'- cCAGUUaGGCUUGUUGCUGUg-----GGUGU- -5'
33037 3' -49.7 NC_007497.1 + 25667 0.77 0.397835
Target:  5'- uGGUCGAcCCGAACAACGGCgGCUCGa- -3'
miRNA:   3'- -CCAGUUaGGCUUGUUGCUG-UGGGUgu -5'
33037 3' -49.7 NC_007497.1 + 4601 0.76 0.437199
Target:  5'- aGGUCGaucgugcgGUCCGGucguGCGGCACCUACAa -3'
miRNA:   3'- -CCAGU--------UAGGCUugu-UGCUGUGGGUGU- -5'
33037 3' -49.7 NC_007497.1 + 37353 0.74 0.565718
Target:  5'- cGGUCAgucGUCCGAgaucgacGCAACcACGCUCGCGa -3'
miRNA:   3'- -CCAGU---UAGGCU-------UGUUGcUGUGGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.