miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33041 3' -52.1 NC_007497.1 + 32179 0.66 0.866405
Target:  5'- uGCGACGcGUcgGCCGuucCGCC-CUCgAUCGu -3'
miRNA:   3'- -CGCUGCuCAa-UGGU---GCGGuGAG-UAGC- -5'
33041 3' -52.1 NC_007497.1 + 12022 0.66 0.866405
Target:  5'- aGCGGCGAaaccgguaccGUgaucgGCCGCGCCgaguACUCGaaugCGg -3'
miRNA:   3'- -CGCUGCU----------CAa----UGGUGCGG----UGAGUa---GC- -5'
33041 3' -52.1 NC_007497.1 + 5917 0.66 0.858023
Target:  5'- aCGGaccuCGAGcaacucGCCGCGCuCGCUCGUCa -3'
miRNA:   3'- cGCU----GCUCaa----UGGUGCG-GUGAGUAGc -5'
33041 3' -52.1 NC_007497.1 + 14515 0.66 0.858023
Target:  5'- uGUGGCcGGgaaUGCCGgGCCGC-CGUCGu -3'
miRNA:   3'- -CGCUGcUCa--AUGGUgCGGUGaGUAGC- -5'
33041 3' -52.1 NC_007497.1 + 34186 0.66 0.858023
Target:  5'- cGCG-CGAGc--UUGCGCgACUCGUCGa -3'
miRNA:   3'- -CGCuGCUCaauGGUGCGgUGAGUAGC- -5'
33041 3' -52.1 NC_007497.1 + 16362 0.66 0.849393
Target:  5'- gGCGAUGAGgcaUAUCgguGCGCCGCU-GUUGa -3'
miRNA:   3'- -CGCUGCUCa--AUGG---UGCGGUGAgUAGC- -5'
33041 3' -52.1 NC_007497.1 + 18533 0.66 0.831423
Target:  5'- aGCGGguCGAGgcGCUugaGCCGCUUAUCc -3'
miRNA:   3'- -CGCU--GCUCaaUGGug-CGGUGAGUAGc -5'
33041 3' -52.1 NC_007497.1 + 21680 0.66 0.831423
Target:  5'- cGCGACGAGcugaCGCGCUuucauGCgcgCGUCGu -3'
miRNA:   3'- -CGCUGCUCaaugGUGCGG-----UGa--GUAGC- -5'
33041 3' -52.1 NC_007497.1 + 38004 0.67 0.81257
Target:  5'- uUGGCGAGUcUGCCuuGCCcUUCGUCc -3'
miRNA:   3'- cGCUGCUCA-AUGGugCGGuGAGUAGc -5'
33041 3' -52.1 NC_007497.1 + 34488 0.67 0.792921
Target:  5'- cGCGAcguCGAGUuugaucgacaUGCagGCGCCGCUCgAUCa -3'
miRNA:   3'- -CGCU---GCUCA----------AUGg-UGCGGUGAG-UAGc -5'
33041 3' -52.1 NC_007497.1 + 32980 0.67 0.792921
Target:  5'- gGCGACGGaacucaucGCuCACGCgGCUCAUUGc -3'
miRNA:   3'- -CGCUGCUcaa-----UG-GUGCGgUGAGUAGC- -5'
33041 3' -52.1 NC_007497.1 + 29008 0.67 0.782826
Target:  5'- gGgGACGAGgcgauucgaAUCGCGCCGgugaUCAUCGg -3'
miRNA:   3'- -CgCUGCUCaa-------UGGUGCGGUg---AGUAGC- -5'
33041 3' -52.1 NC_007497.1 + 3919 0.67 0.782826
Target:  5'- gGCGACGGGcaAUCG-GCCGCaCGUCGa -3'
miRNA:   3'- -CGCUGCUCaaUGGUgCGGUGaGUAGC- -5'
33041 3' -52.1 NC_007497.1 + 21832 0.68 0.762153
Target:  5'- aGCGACGGGcUGCCgAUGCUucCUC-UCGa -3'
miRNA:   3'- -CGCUGCUCaAUGG-UGCGGu-GAGuAGC- -5'
33041 3' -52.1 NC_007497.1 + 22663 0.68 0.7516
Target:  5'- uGC-ACGAGUcggGCCuACGCCauuauucucGCUCAUCa -3'
miRNA:   3'- -CGcUGCUCAa--UGG-UGCGG---------UGAGUAGc -5'
33041 3' -52.1 NC_007497.1 + 32513 0.68 0.740919
Target:  5'- uGCGACcGGcgGCCACGUCACggggccgggcaCGUCGa -3'
miRNA:   3'- -CGCUGcUCaaUGGUGCGGUGa----------GUAGC- -5'
33041 3' -52.1 NC_007497.1 + 5850 0.69 0.697164
Target:  5'- cGCGGCGAGUUGCUcgagguccguagAUGCCugguGCUgAUCc -3'
miRNA:   3'- -CGCUGCUCAAUGG------------UGCGG----UGAgUAGc -5'
33041 3' -52.1 NC_007497.1 + 14355 0.7 0.629769
Target:  5'- gGCGACGcAGUgcaugcgccagcUGCCACGCa--UCAUCa -3'
miRNA:   3'- -CGCUGC-UCA------------AUGGUGCGgugAGUAGc -5'
33041 3' -52.1 NC_007497.1 + 35895 0.72 0.507816
Target:  5'- cGUGACGAucuugagccgGUUGCUcagguuCGUCACUCGUCGg -3'
miRNA:   3'- -CGCUGCU----------CAAUGGu-----GCGGUGAGUAGC- -5'
33041 3' -52.1 NC_007497.1 + 21104 0.72 0.497155
Target:  5'- cCGGCG----GCCGCGCuCGCUCAUCGu -3'
miRNA:   3'- cGCUGCucaaUGGUGCG-GUGAGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.