miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33041 5' -53.4 NC_007497.1 + 19298 0.66 0.75369
Target:  5'- cCGCAguAUGCGc-AGCGGCcgucgaaCAUUUGGCg -3'
miRNA:   3'- -GCGU--UACGCcaUCGUCGa------GUAGACCG- -5'
33041 5' -53.4 NC_007497.1 + 1125 0.66 0.7429
Target:  5'- uGCcGUGCucguGUGGCAagucguGCUguUCUGGCa -3'
miRNA:   3'- gCGuUACGc---CAUCGU------CGAguAGACCG- -5'
33041 5' -53.4 NC_007497.1 + 14071 0.66 0.7429
Target:  5'- uGUA--GCGGgAGCAGUUgGUCaGGCa -3'
miRNA:   3'- gCGUuaCGCCaUCGUCGAgUAGaCCG- -5'
33041 5' -53.4 NC_007497.1 + 16082 0.66 0.7429
Target:  5'- uCGCGc-GCGGUAGCccaaggccGGUUUAUC-GGCg -3'
miRNA:   3'- -GCGUuaCGCCAUCG--------UCGAGUAGaCCG- -5'
33041 5' -53.4 NC_007497.1 + 9097 0.66 0.7429
Target:  5'- gCGCGGgcUGCGGU-GCAGgCcgggggAUCUGGCu -3'
miRNA:   3'- -GCGUU--ACGCCAuCGUC-Gag----UAGACCG- -5'
33041 5' -53.4 NC_007497.1 + 30140 0.66 0.73199
Target:  5'- cCGCAcucgggaccGCGGUAGC-GC-CA-CUGGCa -3'
miRNA:   3'- -GCGUua-------CGCCAUCGuCGaGUaGACCG- -5'
33041 5' -53.4 NC_007497.1 + 13101 0.66 0.73199
Target:  5'- aCGCAcgGCaccGUcgAGCAGUUCAUgcgCUGGUu -3'
miRNA:   3'- -GCGUuaCGc--CA--UCGUCGAGUA---GACCG- -5'
33041 5' -53.4 NC_007497.1 + 457 0.66 0.73199
Target:  5'- aGCAGUGCGGcgcGCGGUUaCGguuacgaaUGGCa -3'
miRNA:   3'- gCGUUACGCCau-CGUCGA-GUag------ACCG- -5'
33041 5' -53.4 NC_007497.1 + 3518 0.67 0.69754
Target:  5'- cCGCGGUGagggaCGGUGGCGGCUgGcaaacggaggaauUCUgauGGCg -3'
miRNA:   3'- -GCGUUAC-----GCCAUCGUCGAgU-------------AGA---CCG- -5'
33041 5' -53.4 NC_007497.1 + 1340 0.67 0.664709
Target:  5'- gGCAuuugAUGCaGU-GCGGUUCGcgCUGGCg -3'
miRNA:   3'- gCGU----UACGcCAuCGUCGAGUa-GACCG- -5'
33041 5' -53.4 NC_007497.1 + 39487 0.67 0.664709
Target:  5'- aCGC--UGCGuGUuGCGGUUCAUCgcgaagcgGGCg -3'
miRNA:   3'- -GCGuuACGC-CAuCGUCGAGUAGa-------CCG- -5'
33041 5' -53.4 NC_007497.1 + 16578 0.68 0.584855
Target:  5'- gCGCAGUGCGGUcaugucgucGGCA-UUCAUCcGGa -3'
miRNA:   3'- -GCGUUACGCCA---------UCGUcGAGUAGaCCg -5'
33041 5' -53.4 NC_007497.1 + 16854 0.69 0.573537
Target:  5'- gCGCuGAUGCGG--GCuGCUCGUCcgccGGCg -3'
miRNA:   3'- -GCG-UUACGCCauCGuCGAGUAGa---CCG- -5'
33041 5' -53.4 NC_007497.1 + 14384 0.7 0.496224
Target:  5'- gCGCGAUGCaGagccgcgGGCcGCUCG-CUGGCg -3'
miRNA:   3'- -GCGUUACGcCa------UCGuCGAGUaGACCG- -5'
33041 5' -53.4 NC_007497.1 + 35773 0.71 0.414162
Target:  5'- aGCAagGCGGUGGC-GCU-GUCcGGCg -3'
miRNA:   3'- gCGUuaCGCCAUCGuCGAgUAGaCCG- -5'
33041 5' -53.4 NC_007497.1 + 32320 0.71 0.413189
Target:  5'- aGCGGUGCuGGUgcuggcgGGCAGUUCGg-UGGCg -3'
miRNA:   3'- gCGUUACG-CCA-------UCGUCGAGUagACCG- -5'
33041 5' -53.4 NC_007497.1 + 35015 0.72 0.408347
Target:  5'- aGCaAGUGCGGUcgcacaggucgcgacGGCccGCUCGaaUCUGGCg -3'
miRNA:   3'- gCG-UUACGCCA---------------UCGu-CGAGU--AGACCG- -5'
33041 5' -53.4 NC_007497.1 + 39641 0.72 0.404498
Target:  5'- aGCGGUGCGGcGGCAGacaUCAcgUCggacGGCa -3'
miRNA:   3'- gCGUUACGCCaUCGUCg--AGU--AGa---CCG- -5'
33041 5' -53.4 NC_007497.1 + 33704 0.72 0.376378
Target:  5'- aGCAgAUGgaGGUcgcgaAGCAGCUC-UCUGGCu -3'
miRNA:   3'- gCGU-UACg-CCA-----UCGUCGAGuAGACCG- -5'
33041 5' -53.4 NC_007497.1 + 34636 0.72 0.376378
Target:  5'- gGCGGUcgccGCGGUGGCGcCUCGUUcGGCg -3'
miRNA:   3'- gCGUUA----CGCCAUCGUcGAGUAGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.