Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33041 | 5' | -53.4 | NC_007497.1 | + | 35015 | 0.72 | 0.408347 |
Target: 5'- aGCaAGUGCGGUcgcacaggucgcgacGGCccGCUCGaaUCUGGCg -3' miRNA: 3'- gCG-UUACGCCA---------------UCGu-CGAGU--AGACCG- -5' |
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33041 | 5' | -53.4 | NC_007497.1 | + | 35773 | 0.71 | 0.414162 |
Target: 5'- aGCAagGCGGUGGC-GCU-GUCcGGCg -3' miRNA: 3'- gCGUuaCGCCAUCGuCGAgUAGaCCG- -5' |
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33041 | 5' | -53.4 | NC_007497.1 | + | 39487 | 0.67 | 0.664709 |
Target: 5'- aCGC--UGCGuGUuGCGGUUCAUCgcgaagcgGGCg -3' miRNA: 3'- -GCGuuACGC-CAuCGUCGAGUAGa-------CCG- -5' |
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33041 | 5' | -53.4 | NC_007497.1 | + | 39641 | 0.72 | 0.404498 |
Target: 5'- aGCGGUGCGGcGGCAGacaUCAcgUCggacGGCa -3' miRNA: 3'- gCGUUACGCCaUCGUCg--AGU--AGa---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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