miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33043 3' -58.9 NC_007497.1 + 274 0.69 0.275901
Target:  5'- -aUCGuCGCGCACC--GCGGCGA-CAGa -3'
miRNA:   3'- aaGGC-GCGCGUGGucUGCCGCUuGUC- -5'
33043 3' -58.9 NC_007497.1 + 2545 0.67 0.378851
Target:  5'- --gCGUGCGCGCCGG-CGGCc-GCGGc -3'
miRNA:   3'- aagGCGCGCGUGGUCuGCCGcuUGUC- -5'
33043 3' -58.9 NC_007497.1 + 2761 0.67 0.386866
Target:  5'- aUCCGCGaagaccgggaucuCGCGCCGcACGGUGAugAa -3'
miRNA:   3'- aAGGCGC-------------GCGUGGUcUGCCGCUugUc -5'
33043 3' -58.9 NC_007497.1 + 2960 0.66 0.463785
Target:  5'- cUCCgGCGCGUgu-GGACGGCGA-CGGu -3'
miRNA:   3'- aAGG-CGCGCGuggUCUGCCGCUuGUC- -5'
33043 3' -58.9 NC_007497.1 + 3406 0.66 0.424761
Target:  5'- gUCCuggaGCGcCGCACgCcgauGGACGGCGAuCAGa -3'
miRNA:   3'- aAGG----CGC-GCGUG-G----UCUGCCGCUuGUC- -5'
33043 3' -58.9 NC_007497.1 + 3683 0.66 0.424761
Target:  5'- cUUCCGCGC-CuCCAGAUGGUcGGCGu -3'
miRNA:   3'- -AAGGCGCGcGuGGUCUGCCGcUUGUc -5'
33043 3' -58.9 NC_007497.1 + 4270 0.67 0.405997
Target:  5'- cUUCGUGCGCauggcGCCGGaauugGCGGCGAAUc- -3'
miRNA:   3'- aAGGCGCGCG-----UGGUC-----UGCCGCUUGuc -5'
33043 3' -58.9 NC_007497.1 + 4988 0.67 0.387764
Target:  5'- -cCCGCuGCGCucGCCAGugGucaGCGAACu- -3'
miRNA:   3'- aaGGCG-CGCG--UGGUCugC---CGCUUGuc -5'
33043 3' -58.9 NC_007497.1 + 8884 0.66 0.463785
Target:  5'- aUCCGUGcCGUugagGCCGGGacCGGCGAugAa -3'
miRNA:   3'- aAGGCGC-GCG----UGGUCU--GCCGCUugUc -5'
33043 3' -58.9 NC_007497.1 + 10158 0.69 0.297508
Target:  5'- -cCUGCGCGCG-CAGAUGGCuuGGGCAa -3'
miRNA:   3'- aaGGCGCGCGUgGUCUGCCG--CUUGUc -5'
33043 3' -58.9 NC_007497.1 + 10891 0.66 0.415314
Target:  5'- -gCUGCGCuacCGCCccagcaagGGGCGGCGAACGu -3'
miRNA:   3'- aaGGCGCGc--GUGG--------UCUGCCGCUUGUc -5'
33043 3' -58.9 NC_007497.1 + 13132 0.67 0.405997
Target:  5'- -gCCGCGCacGCGCCAGcuuugcgaagcGCaGCGAGCGu -3'
miRNA:   3'- aaGGCGCG--CGUGGUC-----------UGcCGCUUGUc -5'
33043 3' -58.9 NC_007497.1 + 13586 1.05 0.000605
Target:  5'- cUUCCGCGCGCACCAGACGGCGAACAGc -3'
miRNA:   3'- -AAGGCGCGCGUGGUCUGCCGCUUGUC- -5'
33043 3' -58.9 NC_007497.1 + 15996 0.69 0.308033
Target:  5'- aUCCGUGCGCGCCgauaaaccggccuugGGcuaccGCGcGCGAGCAc -3'
miRNA:   3'- aAGGCGCGCGUGG---------------UC-----UGC-CGCUUGUc -5'
33043 3' -58.9 NC_007497.1 + 16169 0.67 0.361443
Target:  5'- aUCCcgGCaCGCACCgAGACGGCGAc--- -3'
miRNA:   3'- aAGG--CGcGCGUGG-UCUGCCGCUuguc -5'
33043 3' -58.9 NC_007497.1 + 16771 0.71 0.212898
Target:  5'- -cCCGCaccCGCGCCGG-CGGaCGAGCAGc -3'
miRNA:   3'- aaGGCGc--GCGUGGUCuGCC-GCUUGUC- -5'
33043 3' -58.9 NC_007497.1 + 16855 0.68 0.31263
Target:  5'- aUCUGCGUGCACCccaaaGGCGucuACGGg -3'
miRNA:   3'- aAGGCGCGCGUGGucug-CCGCu--UGUC- -5'
33043 3' -58.9 NC_007497.1 + 16931 0.66 0.434334
Target:  5'- cUUCGUuCGCACCcucgccGGCGGaCGAACGGg -3'
miRNA:   3'- aAGGCGcGCGUGGu-----CUGCC-GCUUGUC- -5'
33043 3' -58.9 NC_007497.1 + 17038 0.67 0.405997
Target:  5'- -gCCGCGcCGCAUCugccaacgAGACGG-GGGCGGa -3'
miRNA:   3'- aaGGCGC-GCGUGG--------UCUGCCgCUUGUC- -5'
33043 3' -58.9 NC_007497.1 + 20918 0.68 0.31186
Target:  5'- -aUCGUGCGCaACCAGGCacugaucGGCGAgaaACGGa -3'
miRNA:   3'- aaGGCGCGCG-UGGUCUG-------CCGCU---UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.