Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33043 | 3' | -58.9 | NC_007497.1 | + | 21328 | 0.68 | 0.336391 |
Target: 5'- --aC-CGCGCGCCGGACGGCu--CAGc -3' miRNA: 3'- aagGcGCGCGUGGUCUGCCGcuuGUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 22865 | 0.7 | 0.236476 |
Target: 5'- gUUCGCGCGCGCUGcGACGuaaCGAGCGGc -3' miRNA: 3'- aAGGCGCGCGUGGU-CUGCc--GCUUGUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 23677 | 0.7 | 0.262204 |
Target: 5'- -gCCGCGUGCugcCCGGACuGGUGaAACGGc -3' miRNA: 3'- aaGGCGCGCGu--GGUCUG-CCGC-UUGUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 23833 | 0.66 | 0.444032 |
Target: 5'- cUCCGCGUGCucgAUCAGACGuugcuccaggcGCGcGCGGc -3' miRNA: 3'- aAGGCGCGCG---UGGUCUGC-----------CGCuUGUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 27062 | 0.67 | 0.405997 |
Target: 5'- -gUCGCGCGC-CguGAaguCGGUGGACGGc -3' miRNA: 3'- aaGGCGCGCGuGguCU---GCCGCUUGUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 27195 | 0.67 | 0.361443 |
Target: 5'- aUCCGCGCaagGCgGGGCGGCGcaucGGCGGc -3' miRNA: 3'- aAGGCGCGcg-UGgUCUGCCGC----UUGUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 27534 | 0.66 | 0.463785 |
Target: 5'- aUCCGguguaCGUGUACaCGG-CGGCGAACGu -3' miRNA: 3'- aAGGC-----GCGCGUG-GUCuGCCGCUUGUc -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 29932 | 0.69 | 0.268982 |
Target: 5'- aUCCGCGCgaguGCugCGGGCucaucguGCGGACAGc -3' miRNA: 3'- aAGGCGCG----CGugGUCUGc------CGCUUGUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 32052 | 0.66 | 0.443056 |
Target: 5'- -gCUGCGUGUgcgcaagGCCGGGuuCGGCGAugGGu -3' miRNA: 3'- aaGGCGCGCG-------UGGUCU--GCCGCUugUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 32236 | 0.66 | 0.424761 |
Target: 5'- -gCCGaCGCGuCGCagauGAUGGCGAGCGc -3' miRNA: 3'- aaGGC-GCGC-GUGgu--CUGCCGCUUGUc -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 32757 | 0.7 | 0.236476 |
Target: 5'- cUCgGCGCGC-CCAG-CGGCGuucucGGCGGa -3' miRNA: 3'- aAGgCGCGCGuGGUCuGCCGC-----UUGUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 33838 | 0.67 | 0.405997 |
Target: 5'- aUUCCGCGCGUugCuGGGCGGUcauaccGAugAc -3' miRNA: 3'- -AAGGCGCGCGugG-UCUGCCG------CUugUc -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 35490 | 0.66 | 0.415314 |
Target: 5'- aUUCCGCaGCGCGUCGaucagguucucGACGGUGAGCu- -3' miRNA: 3'- -AAGGCG-CGCGUGGU-----------CUGCCGCUUGuc -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 35702 | 0.7 | 0.262204 |
Target: 5'- aUUCGCGuCGgGCCAGuuGcGCGGGCAGg -3' miRNA: 3'- aAGGCGC-GCgUGGUCugC-CGCUUGUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 36847 | 0.76 | 0.101284 |
Target: 5'- aUCCGC-UGCGCgAGGCGGCGGGCGu -3' miRNA: 3'- aAGGCGcGCGUGgUCUGCCGCUUGUc -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 37735 | 0.67 | 0.405997 |
Target: 5'- cUCaCGCGCGaCACCacguAGuACGGCGAuuGGg -3' miRNA: 3'- aAG-GCGCGC-GUGG----UC-UGCCGCUugUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 40594 | 0.66 | 0.463785 |
Target: 5'- -cCCgGCGCGCGCCAucGACGcuuCGAugAGc -3' miRNA: 3'- aaGG-CGCGCGUGGU--CUGCc--GCUugUC- -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 41066 | 0.66 | 0.415314 |
Target: 5'- cUUCGCGCGCGCC-GAUGuuGCGAAg-- -3' miRNA: 3'- aAGGCGCGCGUGGuCUGC--CGCUUguc -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 41125 | 0.69 | 0.268982 |
Target: 5'- aUCgGCGCGCGCgaAGucACGGUGAACGu -3' miRNA: 3'- aAGgCGCGCGUGg-UC--UGCCGCUUGUc -5' |
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33043 | 3' | -58.9 | NC_007497.1 | + | 42230 | 0.73 | 0.145738 |
Target: 5'- -aCUGCGCGCGCUgcucGACGGCGAgucgauggcGCGGa -3' miRNA: 3'- aaGGCGCGCGUGGu---CUGCCGCU---------UGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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