miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33044 3' -62.1 NC_007497.1 + 13885 0.71 0.152608
Target:  5'- uGGGCCGC-CGCaGGgGACGCc--GCa -3'
miRNA:   3'- gCCCGGCGaGCGaCCgCUGCGucaCG- -5'
33044 3' -62.1 NC_007497.1 + 13719 0.66 0.342071
Target:  5'- aCGGGCCGCaggggacgcCGCaGGgGACGCc--GCa -3'
miRNA:   3'- -GCCCGGCGa--------GCGaCCgCUGCGucaCG- -5'
33044 3' -62.1 NC_007497.1 + 17565 0.66 0.318727
Target:  5'- cCGGaGCCGCgCGCcgaGGUGAcggauaccgagcCGCAGUGg -3'
miRNA:   3'- -GCC-CGGCGaGCGa--CCGCU------------GCGUCACg -5'
33044 3' -62.1 NC_007497.1 + 13629 0.66 0.311215
Target:  5'- gCGGGCCGC-CGCaugGGCcGcCGCAcggGCc -3'
miRNA:   3'- -GCCCGGCGaGCGa--CCG-CuGCGUca-CG- -5'
33044 3' -62.1 NC_007497.1 + 2451 0.66 0.311215
Target:  5'- uGGG-CGUUCGCgcGGCGACGCGc--- -3'
miRNA:   3'- gCCCgGCGAGCGa-CCGCUGCGUcacg -5'
33044 3' -62.1 NC_007497.1 + 41089 0.66 0.30384
Target:  5'- aGcGCCGCgcugauccgcuUCGC-GGUGACGcCGGUGCc -3'
miRNA:   3'- gCcCGGCG-----------AGCGaCCGCUGC-GUCACG- -5'
33044 3' -62.1 NC_007497.1 + 27587 0.67 0.275684
Target:  5'- -cGGCCGC-CGaCUGGaucACGCAGUuGCa -3'
miRNA:   3'- gcCCGGCGaGC-GACCgc-UGCGUCA-CG- -5'
33044 3' -62.1 NC_007497.1 + 35744 0.67 0.262406
Target:  5'- gCGGGCCGaCUUGCuugaUGGacaGACcaaGGUGCg -3'
miRNA:   3'- -GCCCGGC-GAGCG----ACCg--CUGcg-UCACG- -5'
33044 3' -62.1 NC_007497.1 + 188 0.68 0.243471
Target:  5'- uCGGGUCGa--GCUGGagccgucuguCGcCGCGGUGCg -3'
miRNA:   3'- -GCCCGGCgagCGACC----------GCuGCGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 13840 0.7 0.165261
Target:  5'- gGGGCCGC-CGCagggGGCGcCGCAuggGCc -3'
miRNA:   3'- gCCCGGCGaGCGa---CCGCuGCGUca-CG- -5'
33044 3' -62.1 NC_007497.1 + 44298 0.7 0.165261
Target:  5'- --uGCCGC-CGUUGGCGAUcaaccgcgGCGGUGCc -3'
miRNA:   3'- gccCGGCGaGCGACCGCUG--------CGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 2541 0.71 0.156725
Target:  5'- cCGGGCgUGCgCGCcGGCGGcCGCGGcGCa -3'
miRNA:   3'- -GCCCG-GCGaGCGaCCGCU-GCGUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 35878 0.7 0.188448
Target:  5'- gCGGaGCCGCUCGac-GCGACgGCGGaGCu -3'
miRNA:   3'- -GCC-CGGCGAGCgacCGCUG-CGUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 42895 0.7 0.169684
Target:  5'- aCGGaacGCCGCaUCGC-GGCGGCGuCGGgGCa -3'
miRNA:   3'- -GCC---CGGCG-AGCGaCCGCUGC-GUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 37695 0.7 0.169684
Target:  5'- cCGaGGCCGaCUCGCUGGCcGAC-CAGa-- -3'
miRNA:   3'- -GC-CCGGC-GAGCGACCG-CUGcGUCacg -5'
33044 3' -62.1 NC_007497.1 + 34066 0.71 0.148194
Target:  5'- gGGGCgCGCgcaCGCUGGCagcgaugGACGCcgcagcacggGGUGCu -3'
miRNA:   3'- gCCCG-GCGa--GCGACCG-------CUGCG----------UCACG- -5'
33044 3' -62.1 NC_007497.1 + 32304 0.72 0.12991
Target:  5'- gCGGGCaGUUCGgUGGCGauaGCGCGGcacUGCa -3'
miRNA:   3'- -GCCCGgCGAGCgACCGC---UGCGUC---ACG- -5'
33044 3' -62.1 NC_007497.1 + 32340 0.72 0.123064
Target:  5'- aCGGuggGCUUGUUGGCGGCaGCGGUGCu -3'
miRNA:   3'- -GCCcggCGAGCGACCGCUG-CGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 16846 0.77 0.055085
Target:  5'- gCGGGCUGCUCGUccGcCGGCGCGGgUGCg -3'
miRNA:   3'- -GCCCGGCGAGCGacC-GCUGCGUC-ACG- -5'
33044 3' -62.1 NC_007497.1 + 4896 0.66 0.350122
Target:  5'- cCGGGCCGCUgagaaGUUcaaGGCGcagaACGgaGGUGCg -3'
miRNA:   3'- -GCCCGGCGAg----CGA---CCGC----UGCg-UCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.