miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33044 3' -62.1 NC_007497.1 + 188 0.68 0.243471
Target:  5'- uCGGGUCGa--GCUGGagccgucuguCGcCGCGGUGCg -3'
miRNA:   3'- -GCCCGGCgagCGACC----------GCuGCGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 2451 0.66 0.311215
Target:  5'- uGGG-CGUUCGCgcGGCGACGCGc--- -3'
miRNA:   3'- gCCCgGCGAGCGa-CCGCUGCGUcacg -5'
33044 3' -62.1 NC_007497.1 + 2541 0.71 0.156725
Target:  5'- cCGGGCgUGCgCGCcGGCGGcCGCGGcGCa -3'
miRNA:   3'- -GCCCG-GCGaGCGaCCGCU-GCGUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 4896 0.66 0.350122
Target:  5'- cCGGGCCGCUgagaaGUUcaaGGCGcagaACGgaGGUGCg -3'
miRNA:   3'- -GCCCGGCGAg----CGA---CCGC----UGCg-UCACG- -5'
33044 3' -62.1 NC_007497.1 + 13629 0.66 0.311215
Target:  5'- gCGGGCCGC-CGCaugGGCcGcCGCAcggGCc -3'
miRNA:   3'- -GCCCGGCGaGCGa--CCG-CuGCGUca-CG- -5'
33044 3' -62.1 NC_007497.1 + 13719 0.66 0.342071
Target:  5'- aCGGGCCGCaggggacgcCGCaGGgGACGCc--GCa -3'
miRNA:   3'- -GCCCGGCGa--------GCGaCCgCUGCGucaCG- -5'
33044 3' -62.1 NC_007497.1 + 13840 0.7 0.165261
Target:  5'- gGGGCCGC-CGCagggGGCGcCGCAuggGCc -3'
miRNA:   3'- gCCCGGCGaGCGa---CCGCuGCGUca-CG- -5'
33044 3' -62.1 NC_007497.1 + 13885 0.71 0.152608
Target:  5'- uGGGCCGC-CGCaGGgGACGCc--GCa -3'
miRNA:   3'- gCCCGGCGaGCGaCCgCUGCGucaCG- -5'
33044 3' -62.1 NC_007497.1 + 14369 1.11 0.000118
Target:  5'- gCGGGCCGCUCGCUGGCGACGCAGUGCa -3'
miRNA:   3'- -GCCCGGCGAGCGACCGCUGCGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 15106 0.66 0.331806
Target:  5'- gCGGGCCaCUaucagGGCGACGCgcuguucuugggugAGUGCc -3'
miRNA:   3'- -GCCCGGcGAgcga-CCGCUGCG--------------UCACG- -5'
33044 3' -62.1 NC_007497.1 + 16846 0.77 0.055085
Target:  5'- gCGGGCUGCUCGUccGcCGGCGCGGgUGCg -3'
miRNA:   3'- -GCCCGGCGAGCGacC-GCUGCGUC-ACG- -5'
33044 3' -62.1 NC_007497.1 + 17565 0.66 0.318727
Target:  5'- cCGGaGCCGCgCGCcgaGGUGAcggauaccgagcCGCAGUGg -3'
miRNA:   3'- -GCC-CGGCGaGCGa--CCGCU------------GCGUCACg -5'
33044 3' -62.1 NC_007497.1 + 23013 0.66 0.334154
Target:  5'- -uGGCCGCaUGCgggggcGGCGACGaCAGcgGCc -3'
miRNA:   3'- gcCCGGCGaGCGa-----CCGCUGC-GUCa-CG- -5'
33044 3' -62.1 NC_007497.1 + 26429 0.68 0.243471
Target:  5'- gGGGaCgGCUCgGCaGGCGAcaCGCAGcGCa -3'
miRNA:   3'- gCCC-GgCGAG-CGaCCGCU--GCGUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 27587 0.67 0.275684
Target:  5'- -cGGCCGC-CGaCUGGaucACGCAGUuGCa -3'
miRNA:   3'- gcCCGGCGaGC-GACCgc-UGCGUCA-CG- -5'
33044 3' -62.1 NC_007497.1 + 29211 0.66 0.311215
Target:  5'- uGaGGCUGUacgggaUCGCUGGCacgcguuucgGGCGC-GUGCa -3'
miRNA:   3'- gC-CCGGCG------AGCGACCG----------CUGCGuCACG- -5'
33044 3' -62.1 NC_007497.1 + 30790 0.66 0.342071
Target:  5'- gGGGCCaGCUgacagCGCgucgugucGCGGCGUAGUcGCg -3'
miRNA:   3'- gCCCGG-CGA-----GCGac------CGCUGCGUCA-CG- -5'
33044 3' -62.1 NC_007497.1 + 32304 0.72 0.12991
Target:  5'- gCGGGCaGUUCGgUGGCGauaGCGCGGcacUGCa -3'
miRNA:   3'- -GCCCGgCGAGCgACCGC---UGCGUC---ACG- -5'
33044 3' -62.1 NC_007497.1 + 32340 0.72 0.123064
Target:  5'- aCGGuggGCUUGUUGGCGGCaGCGGUGCu -3'
miRNA:   3'- -GCCcggCGAGCGACCGCUG-CGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 32575 0.66 0.350122
Target:  5'- gCGGGCgGCcugUCGgaUGGCGuCGCGGccGCc -3'
miRNA:   3'- -GCCCGgCG---AGCg-ACCGCuGCGUCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.