Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33044 | 3' | -62.1 | NC_007497.1 | + | 33836 | 0.67 | 0.275684 |
Target: 5'- cCGGGuuGaUUGCggGGCG-CGCGGaUGCa -3' miRNA: 3'- -GCCCggCgAGCGa-CCGCuGCGUC-ACG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 34066 | 0.71 | 0.148194 |
Target: 5'- gGGGCgCGCgcaCGCUGGCagcgaugGACGCcgcagcacggGGUGCu -3' miRNA: 3'- gCCCG-GCGa--GCGACCG-------CUGCG----------UCACG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 34759 | 0.67 | 0.259814 |
Target: 5'- uCGcGGCCGCcgagCGCgaaguagcgaucGCGACGCAG-GCg -3' miRNA: 3'- -GC-CCGGCGa---GCGac----------CGCUGCGUCaCG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 34893 | 0.66 | 0.350122 |
Target: 5'- aGGGCgagcucgagCGUccgaggcgUCGCUGGCGuugGCGCAGcaGCg -3' miRNA: 3'- gCCCG---------GCG--------AGCGACCGC---UGCGUCa-CG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 35744 | 0.67 | 0.262406 |
Target: 5'- gCGGGCCGaCUUGCuugaUGGacaGACcaaGGUGCg -3' miRNA: 3'- -GCCCGGC-GAGCG----ACCg--CUGcg-UCACG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 35878 | 0.7 | 0.188448 |
Target: 5'- gCGGaGCCGCUCGac-GCGACgGCGGaGCu -3' miRNA: 3'- -GCC-CGGCGAGCgacCGCUG-CGUCaCG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 36175 | 0.66 | 0.342071 |
Target: 5'- uGGGCUgGCgUCGaCggccGGCGgcuauuucaACGCGGUGCg -3' miRNA: 3'- gCCCGG-CG-AGC-Ga---CCGC---------UGCGUCACG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 37695 | 0.7 | 0.169684 |
Target: 5'- cCGaGGCCGaCUCGCUGGCcGAC-CAGa-- -3' miRNA: 3'- -GC-CCGGC-GAGCGACCG-CUGcGUCacg -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 39715 | 0.66 | 0.334154 |
Target: 5'- aCGGGCUGCUuaCGUacaucGCGG-GCGGUGCc -3' miRNA: 3'- -GCCCGGCGA--GCGac---CGCUgCGUCACG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 41089 | 0.66 | 0.30384 |
Target: 5'- aGcGCCGCgcugauccgcuUCGC-GGUGACGcCGGUGCc -3' miRNA: 3'- gCcCGGCG-----------AGCGaCCGCUGC-GUCACG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 42433 | 0.69 | 0.209014 |
Target: 5'- aCGGGUCGCgagacgcgagCGCU-GCGAaacaugGCGGUGCu -3' miRNA: 3'- -GCCCGGCGa---------GCGAcCGCUg-----CGUCACG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 42895 | 0.7 | 0.169684 |
Target: 5'- aCGGaacGCCGCaUCGC-GGCGGCGuCGGgGCa -3' miRNA: 3'- -GCC---CGGCG-AGCGaCCGCUGC-GUCaCG- -5' |
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33044 | 3' | -62.1 | NC_007497.1 | + | 44298 | 0.7 | 0.165261 |
Target: 5'- --uGCCGC-CGUUGGCGAUcaaccgcgGCGGUGCc -3' miRNA: 3'- gccCGGCGaGCGACCGCUG--------CGUCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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