miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33044 3' -62.1 NC_007497.1 + 44298 0.7 0.165261
Target:  5'- --uGCCGC-CGUUGGCGAUcaaccgcgGCGGUGCc -3'
miRNA:   3'- gccCGGCGaGCGACCGCUG--------CGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 42895 0.7 0.169684
Target:  5'- aCGGaacGCCGCaUCGC-GGCGGCGuCGGgGCa -3'
miRNA:   3'- -GCC---CGGCG-AGCGaCCGCUGC-GUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 42433 0.69 0.209014
Target:  5'- aCGGGUCGCgagacgcgagCGCU-GCGAaacaugGCGGUGCu -3'
miRNA:   3'- -GCCCGGCGa---------GCGAcCGCUg-----CGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 41089 0.66 0.30384
Target:  5'- aGcGCCGCgcugauccgcuUCGC-GGUGACGcCGGUGCc -3'
miRNA:   3'- gCcCGGCG-----------AGCGaCCGCUGC-GUCACG- -5'
33044 3' -62.1 NC_007497.1 + 39715 0.66 0.334154
Target:  5'- aCGGGCUGCUuaCGUacaucGCGG-GCGGUGCc -3'
miRNA:   3'- -GCCCGGCGA--GCGac---CGCUgCGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 37695 0.7 0.169684
Target:  5'- cCGaGGCCGaCUCGCUGGCcGAC-CAGa-- -3'
miRNA:   3'- -GC-CCGGC-GAGCGACCG-CUGcGUCacg -5'
33044 3' -62.1 NC_007497.1 + 36175 0.66 0.342071
Target:  5'- uGGGCUgGCgUCGaCggccGGCGgcuauuucaACGCGGUGCg -3'
miRNA:   3'- gCCCGG-CG-AGC-Ga---CCGC---------UGCGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 35878 0.7 0.188448
Target:  5'- gCGGaGCCGCUCGac-GCGACgGCGGaGCu -3'
miRNA:   3'- -GCC-CGGCGAGCgacCGCUG-CGUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 35744 0.67 0.262406
Target:  5'- gCGGGCCGaCUUGCuugaUGGacaGACcaaGGUGCg -3'
miRNA:   3'- -GCCCGGC-GAGCG----ACCg--CUGcg-UCACG- -5'
33044 3' -62.1 NC_007497.1 + 34893 0.66 0.350122
Target:  5'- aGGGCgagcucgagCGUccgaggcgUCGCUGGCGuugGCGCAGcaGCg -3'
miRNA:   3'- gCCCG---------GCG--------AGCGACCGC---UGCGUCa-CG- -5'
33044 3' -62.1 NC_007497.1 + 34759 0.67 0.259814
Target:  5'- uCGcGGCCGCcgagCGCgaaguagcgaucGCGACGCAG-GCg -3'
miRNA:   3'- -GC-CCGGCGa---GCGac----------CGCUGCGUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 34066 0.71 0.148194
Target:  5'- gGGGCgCGCgcaCGCUGGCagcgaugGACGCcgcagcacggGGUGCu -3'
miRNA:   3'- gCCCG-GCGa--GCGACCG-------CUGCG----------UCACG- -5'
33044 3' -62.1 NC_007497.1 + 33836 0.67 0.275684
Target:  5'- cCGGGuuGaUUGCggGGCG-CGCGGaUGCa -3'
miRNA:   3'- -GCCCggCgAGCGa-CCGCuGCGUC-ACG- -5'
33044 3' -62.1 NC_007497.1 + 32575 0.66 0.350122
Target:  5'- gCGGGCgGCcugUCGgaUGGCGuCGCGGccGCc -3'
miRNA:   3'- -GCCCGgCG---AGCg-ACCGCuGCGUCa-CG- -5'
33044 3' -62.1 NC_007497.1 + 32340 0.72 0.123064
Target:  5'- aCGGuggGCUUGUUGGCGGCaGCGGUGCu -3'
miRNA:   3'- -GCCcggCGAGCGACCGCUG-CGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 32304 0.72 0.12991
Target:  5'- gCGGGCaGUUCGgUGGCGauaGCGCGGcacUGCa -3'
miRNA:   3'- -GCCCGgCGAGCgACCGC---UGCGUC---ACG- -5'
33044 3' -62.1 NC_007497.1 + 30790 0.66 0.342071
Target:  5'- gGGGCCaGCUgacagCGCgucgugucGCGGCGUAGUcGCg -3'
miRNA:   3'- gCCCGG-CGA-----GCGac------CGCUGCGUCA-CG- -5'
33044 3' -62.1 NC_007497.1 + 29211 0.66 0.311215
Target:  5'- uGaGGCUGUacgggaUCGCUGGCacgcguuucgGGCGC-GUGCa -3'
miRNA:   3'- gC-CCGGCG------AGCGACCG----------CUGCGuCACG- -5'
33044 3' -62.1 NC_007497.1 + 27587 0.67 0.275684
Target:  5'- -cGGCCGC-CGaCUGGaucACGCAGUuGCa -3'
miRNA:   3'- gcCCGGCGaGC-GACCgc-UGCGUCA-CG- -5'
33044 3' -62.1 NC_007497.1 + 26429 0.68 0.243471
Target:  5'- gGGGaCgGCUCgGCaGGCGAcaCGCAGcGCa -3'
miRNA:   3'- gCCC-GgCGAG-CGaCCGCU--GCGUCaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.