miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33044 3' -62.1 NC_007497.1 + 42433 0.69 0.209014
Target:  5'- aCGGGUCGCgagacgcgagCGCU-GCGAaacaugGCGGUGCu -3'
miRNA:   3'- -GCCCGGCGa---------GCGAcCGCUg-----CGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 35878 0.7 0.188448
Target:  5'- gCGGaGCCGCUCGac-GCGACgGCGGaGCu -3'
miRNA:   3'- -GCC-CGGCGAGCgacCGCUG-CGUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 42895 0.7 0.169684
Target:  5'- aCGGaacGCCGCaUCGC-GGCGGCGuCGGgGCa -3'
miRNA:   3'- -GCC---CGGCG-AGCGaCCGCUGC-GUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 37695 0.7 0.169684
Target:  5'- cCGaGGCCGaCUCGCUGGCcGAC-CAGa-- -3'
miRNA:   3'- -GC-CCGGC-GAGCGACCG-CUGcGUCacg -5'
33044 3' -62.1 NC_007497.1 + 44298 0.7 0.165261
Target:  5'- --uGCCGC-CGUUGGCGAUcaaccgcgGCGGUGCc -3'
miRNA:   3'- gccCGGCGaGCGACCGCUG--------CGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 13840 0.7 0.165261
Target:  5'- gGGGCCGC-CGCagggGGCGcCGCAuggGCc -3'
miRNA:   3'- gCCCGGCGaGCGa---CCGCuGCGUca-CG- -5'
33044 3' -62.1 NC_007497.1 + 2541 0.71 0.156725
Target:  5'- cCGGGCgUGCgCGCcGGCGGcCGCGGcGCa -3'
miRNA:   3'- -GCCCG-GCGaGCGaCCGCU-GCGUCaCG- -5'
33044 3' -62.1 NC_007497.1 + 13885 0.71 0.152608
Target:  5'- uGGGCCGC-CGCaGGgGACGCc--GCa -3'
miRNA:   3'- gCCCGGCGaGCGaCCgCUGCGucaCG- -5'
33044 3' -62.1 NC_007497.1 + 34066 0.71 0.148194
Target:  5'- gGGGCgCGCgcaCGCUGGCagcgaugGACGCcgcagcacggGGUGCu -3'
miRNA:   3'- gCCCG-GCGa--GCGACCG-------CUGCG----------UCACG- -5'
33044 3' -62.1 NC_007497.1 + 32304 0.72 0.12991
Target:  5'- gCGGGCaGUUCGgUGGCGauaGCGCGGcacUGCa -3'
miRNA:   3'- -GCCCGgCGAGCgACCGC---UGCGUC---ACG- -5'
33044 3' -62.1 NC_007497.1 + 32340 0.72 0.123064
Target:  5'- aCGGuggGCUUGUUGGCGGCaGCGGUGCu -3'
miRNA:   3'- -GCCcggCGAGCGACCGCUG-CGUCACG- -5'
33044 3' -62.1 NC_007497.1 + 16846 0.77 0.055085
Target:  5'- gCGGGCUGCUCGUccGcCGGCGCGGgUGCg -3'
miRNA:   3'- -GCCCGGCGAGCGacC-GCUGCGUC-ACG- -5'
33044 3' -62.1 NC_007497.1 + 14369 1.11 0.000118
Target:  5'- gCGGGCCGCUCGCUGGCGACGCAGUGCa -3'
miRNA:   3'- -GCCCGGCGAGCGACCGCUGCGUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.