miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33045 5' -56.8 NC_007497.1 + 23565 0.66 0.617892
Target:  5'- gCGGCGGCGGGC--GCCGG-CGucgugcaccuGAUCa -3'
miRNA:   3'- -GCCGCUGCUCGuuCGGUCuGC----------CUAGc -5'
33045 5' -56.8 NC_007497.1 + 36093 0.66 0.606931
Target:  5'- gCGGCGAgCGuGCAGGUaaCGGuacGCGcGAUCGa -3'
miRNA:   3'- -GCCGCU-GCuCGUUCG--GUC---UGC-CUAGC- -5'
33045 5' -56.8 NC_007497.1 + 42191 0.66 0.603647
Target:  5'- -cGUGugGAGCGguaaucGGCCGaucagacugauuccGAUGGAUCGa -3'
miRNA:   3'- gcCGCugCUCGU------UCGGU--------------CUGCCUAGC- -5'
33045 5' -56.8 NC_007497.1 + 5047 0.66 0.595993
Target:  5'- uGGCGAgCGcAGcCGGGCCAGAaGGGaCGa -3'
miRNA:   3'- gCCGCU-GC-UC-GUUCGGUCUgCCUaGC- -5'
33045 5' -56.8 NC_007497.1 + 42334 0.66 0.585084
Target:  5'- -aGCGACGAcaGCAAGCagguauuGACGGA-CGa -3'
miRNA:   3'- gcCGCUGCU--CGUUCGgu-----CUGCCUaGC- -5'
33045 5' -56.8 NC_007497.1 + 30146 0.66 0.585084
Target:  5'- cCGGUGAgCGAuccuGCGuuggaucgcugcAGCCAG-CGGAUCa -3'
miRNA:   3'- -GCCGCU-GCU----CGU------------UCGGUCuGCCUAGc -5'
33045 5' -56.8 NC_007497.1 + 40971 0.66 0.574215
Target:  5'- cCGGCGACGAGau--CCuGAUGGGUg- -3'
miRNA:   3'- -GCCGCUGCUCguucGGuCUGCCUAgc -5'
33045 5' -56.8 NC_007497.1 + 4123 0.67 0.546196
Target:  5'- gCGGCGguacGCGAGCGguucggggacgcggcGGCCgAGACGGcaCGg -3'
miRNA:   3'- -GCCGC----UGCUCGU---------------UCGG-UCUGCCuaGC- -5'
33045 5' -56.8 NC_007497.1 + 39464 0.67 0.541922
Target:  5'- cCGGCGACGcuGGCGGGCUAucCGGuuacCGa -3'
miRNA:   3'- -GCCGCUGC--UCGUUCGGUcuGCCua--GC- -5'
33045 5' -56.8 NC_007497.1 + 44177 0.67 0.541922
Target:  5'- uCGGCGaAUGcAGCGAG-CAGugGGucuUCGa -3'
miRNA:   3'- -GCCGC-UGC-UCGUUCgGUCugCCu--AGC- -5'
33045 5' -56.8 NC_007497.1 + 18901 0.67 0.531288
Target:  5'- aGaGCGGCGAGCAAGgUgucGAUGGcGUCGg -3'
miRNA:   3'- gC-CGCUGCUCGUUCgGu--CUGCC-UAGC- -5'
33045 5' -56.8 NC_007497.1 + 32586 0.67 0.510256
Target:  5'- uCGGCGgacugGCGGGCGgccuGUCGGAUGGcGUCGc -3'
miRNA:   3'- -GCCGC-----UGCUCGUu---CGGUCUGCC-UAGC- -5'
33045 5' -56.8 NC_007497.1 + 5883 0.67 0.510256
Target:  5'- aGcCGACGaAGCu-GCCGGGCGGAcUCGc -3'
miRNA:   3'- gCcGCUGC-UCGuuCGGUCUGCCU-AGC- -5'
33045 5' -56.8 NC_007497.1 + 10913 0.68 0.489579
Target:  5'- gGGCGGCGAaCGuggAGCUAGGaaUGGAUCa -3'
miRNA:   3'- gCCGCUGCUcGU---UCGGUCU--GCCUAGc -5'
33045 5' -56.8 NC_007497.1 + 26662 0.68 0.489579
Target:  5'- aCGGCGACuGGGUcgcuguuGCgCAGACGGG-CGg -3'
miRNA:   3'- -GCCGCUG-CUCGuu-----CG-GUCUGCCUaGC- -5'
33045 5' -56.8 NC_007497.1 + 33381 0.68 0.473323
Target:  5'- gCGGUGGCGAccGaCAAGCUgacgcaguccgagaaGGAuCGGAUCGg -3'
miRNA:   3'- -GCCGCUGCU--C-GUUCGG---------------UCU-GCCUAGC- -5'
33045 5' -56.8 NC_007497.1 + 34560 0.68 0.469302
Target:  5'- cCGuGCGcAUGAGCGAGCCuGcGCGGG-CGg -3'
miRNA:   3'- -GC-CGC-UGCUCGUUCGGuC-UGCCUaGC- -5'
33045 5' -56.8 NC_007497.1 + 33848 0.68 0.468299
Target:  5'- aGGCG-CG-GCAGGCCGGguugauuGCGGggCGc -3'
miRNA:   3'- gCCGCuGCuCGUUCGGUC-------UGCCuaGC- -5'
33045 5' -56.8 NC_007497.1 + 40740 0.68 0.459325
Target:  5'- -cGCGACGGGCAAGCUcGACaGcgCa -3'
miRNA:   3'- gcCGCUGCUCGUUCGGuCUGcCuaGc -5'
33045 5' -56.8 NC_007497.1 + 29783 0.68 0.449463
Target:  5'- gGGCG-CGAGCGcgaacuGGUCGGuCGGAgUCGg -3'
miRNA:   3'- gCCGCuGCUCGU------UCGGUCuGCCU-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.