miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33045 5' -56.8 NC_007497.1 + 3920 0.7 0.357821
Target:  5'- aGGCGACGGGCAaucGGCCGcACG--UCGa -3'
miRNA:   3'- gCCGCUGCUCGU---UCGGUcUGCcuAGC- -5'
33045 5' -56.8 NC_007497.1 + 4123 0.67 0.546196
Target:  5'- gCGGCGguacGCGAGCGguucggggacgcggcGGCCgAGACGGcaCGg -3'
miRNA:   3'- -GCCGC----UGCUCGU---------------UCGG-UCUGCCuaGC- -5'
33045 5' -56.8 NC_007497.1 + 4170 0.71 0.301912
Target:  5'- uGcGCGACGcGCGGGCCGGAaGGAaCGg -3'
miRNA:   3'- gC-CGCUGCuCGUUCGGUCUgCCUaGC- -5'
33045 5' -56.8 NC_007497.1 + 5047 0.66 0.595993
Target:  5'- uGGCGAgCGcAGcCGGGCCAGAaGGGaCGa -3'
miRNA:   3'- gCCGCU-GC-UC-GUUCGGUCUgCCUaGC- -5'
33045 5' -56.8 NC_007497.1 + 5455 0.69 0.420597
Target:  5'- aCGGacacgGGCGAGCGcGCCGGACGuacgcgucaGGUCGu -3'
miRNA:   3'- -GCCg----CUGCUCGUuCGGUCUGC---------CUAGC- -5'
33045 5' -56.8 NC_007497.1 + 5834 0.69 0.430095
Target:  5'- uCGGCuGACGAGCGAGCgCGG-CGaGUUGc -3'
miRNA:   3'- -GCCG-CUGCUCGUUCG-GUCuGCcUAGC- -5'
33045 5' -56.8 NC_007497.1 + 5883 0.67 0.510256
Target:  5'- aGcCGACGaAGCu-GCCGGGCGGAcUCGc -3'
miRNA:   3'- gCcGCUGC-UCGuuCGGUCUGCCU-AGC- -5'
33045 5' -56.8 NC_007497.1 + 6938 0.71 0.333002
Target:  5'- gGGCGAcauCGAGU--GCCGGcCGGAUCa -3'
miRNA:   3'- gCCGCU---GCUCGuuCGGUCuGCCUAGc -5'
33045 5' -56.8 NC_007497.1 + 9093 0.72 0.294497
Target:  5'- gGGCuGCGGuGCAGGCCGGG-GGAUCu -3'
miRNA:   3'- gCCGcUGCU-CGUUCGGUCUgCCUAGc -5'
33045 5' -56.8 NC_007497.1 + 10549 0.69 0.430095
Target:  5'- gGGUuguCGAGC-AGCCAGACGGcagCGu -3'
miRNA:   3'- gCCGcu-GCUCGuUCGGUCUGCCua-GC- -5'
33045 5' -56.8 NC_007497.1 + 10913 0.68 0.489579
Target:  5'- gGGCGGCGAaCGuggAGCUAGGaaUGGAUCa -3'
miRNA:   3'- gCCGCUGCUcGU---UCGGUCU--GCCUAGc -5'
33045 5' -56.8 NC_007497.1 + 14843 1.09 0.000606
Target:  5'- uCGGCGACGAGCAAGCCAGACGGAUCGa -3'
miRNA:   3'- -GCCGCUGCUCGUUCGGUCUGCCUAGC- -5'
33045 5' -56.8 NC_007497.1 + 18901 0.67 0.531288
Target:  5'- aGaGCGGCGAGCAAGgUgucGAUGGcGUCGg -3'
miRNA:   3'- gC-CGCUGCUCGUUCgGu--CUGCC-UAGC- -5'
33045 5' -56.8 NC_007497.1 + 21315 0.72 0.272416
Target:  5'- gGGUGACGAuggaaccGCGcGCCGGACGGcUCa -3'
miRNA:   3'- gCCGCUGCU-------CGUuCGGUCUGCCuAGc -5'
33045 5' -56.8 NC_007497.1 + 23565 0.66 0.617892
Target:  5'- gCGGCGGCGGGC--GCCGG-CGucgugcaccuGAUCa -3'
miRNA:   3'- -GCCGCUGCUCGuuCGGUCuGC----------CUAGc -5'
33045 5' -56.8 NC_007497.1 + 24988 0.73 0.222168
Target:  5'- aGGCGAUG-GUcGGCCAGGCGG-UCa -3'
miRNA:   3'- gCCGCUGCuCGuUCGGUCUGCCuAGc -5'
33045 5' -56.8 NC_007497.1 + 26662 0.68 0.489579
Target:  5'- aCGGCGACuGGGUcgcuguuGCgCAGACGGG-CGg -3'
miRNA:   3'- -GCCGCUG-CUCGuu-----CG-GUCUGCCUaGC- -5'
33045 5' -56.8 NC_007497.1 + 29783 0.68 0.449463
Target:  5'- gGGCG-CGAGCGcgaacuGGUCGGuCGGAgUCGg -3'
miRNA:   3'- gCCGCuGCUCGU------UCGGUCuGCCU-AGC- -5'
33045 5' -56.8 NC_007497.1 + 30146 0.66 0.585084
Target:  5'- cCGGUGAgCGAuccuGCGuuggaucgcugcAGCCAG-CGGAUCa -3'
miRNA:   3'- -GCCGCU-GCU----CGU------------UCGGUCuGCCUAGc -5'
33045 5' -56.8 NC_007497.1 + 30329 0.72 0.257566
Target:  5'- uGGCGAauCGAGCAgaaaagcgacgaacAGCCGGGCGugcaGGUCGa -3'
miRNA:   3'- gCCGCU--GCUCGU--------------UCGGUCUGC----CUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.