Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33045 | 5' | -56.8 | NC_007497.1 | + | 32586 | 0.67 | 0.510256 |
Target: 5'- uCGGCGgacugGCGGGCGgccuGUCGGAUGGcGUCGc -3' miRNA: 3'- -GCCGC-----UGCUCGUu---CGGUCUGCC-UAGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 33381 | 0.68 | 0.473323 |
Target: 5'- gCGGUGGCGAccGaCAAGCUgacgcaguccgagaaGGAuCGGAUCGg -3' miRNA: 3'- -GCCGCUGCU--C-GUUCGG---------------UCU-GCCUAGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 33848 | 0.68 | 0.468299 |
Target: 5'- aGGCG-CG-GCAGGCCGGguugauuGCGGggCGc -3' miRNA: 3'- gCCGCuGCuCGUUCGGUC-------UGCCuaGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 34560 | 0.68 | 0.469302 |
Target: 5'- cCGuGCGcAUGAGCGAGCCuGcGCGGG-CGg -3' miRNA: 3'- -GC-CGC-UGCUCGUUCGGuC-UGCCUaGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 36093 | 0.66 | 0.606931 |
Target: 5'- gCGGCGAgCGuGCAGGUaaCGGuacGCGcGAUCGa -3' miRNA: 3'- -GCCGCU-GCuCGUUCG--GUC---UGC-CUAGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 36835 | 0.76 | 0.152494 |
Target: 5'- aGGCGGCGGGCGucgAGCCGGACGacGA-CGa -3' miRNA: 3'- gCCGCUGCUCGU---UCGGUCUGC--CUaGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 39075 | 0.73 | 0.234092 |
Target: 5'- cCGGCGACGAGUgcccggaaGAGCUggaAGACGGugcccgagcgGUCGg -3' miRNA: 3'- -GCCGCUGCUCG--------UUCGG---UCUGCC----------UAGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 39464 | 0.67 | 0.541922 |
Target: 5'- cCGGCGACGcuGGCGGGCUAucCGGuuacCGa -3' miRNA: 3'- -GCCGCUGC--UCGUUCGGUcuGCCua--GC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 40125 | 0.7 | 0.341133 |
Target: 5'- gCGGCGACGuGCAGGCCGcgcuGAacaaGGG-CGa -3' miRNA: 3'- -GCCGCUGCuCGUUCGGU----CUg---CCUaGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 40740 | 0.68 | 0.459325 |
Target: 5'- -cGCGACGGGCAAGCUcGACaGcgCa -3' miRNA: 3'- gcCGCUGCUCGUUCGGuCUGcCuaGc -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 40971 | 0.66 | 0.574215 |
Target: 5'- cCGGCGACGAGau--CCuGAUGGGUg- -3' miRNA: 3'- -GCCGCUGCUCguucGGuCUGCCUAgc -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 42191 | 0.66 | 0.603647 |
Target: 5'- -cGUGugGAGCGguaaucGGCCGaucagacugauuccGAUGGAUCGa -3' miRNA: 3'- gcCGCugCUCGU------UCGGU--------------CUGCCUAGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 42334 | 0.66 | 0.585084 |
Target: 5'- -aGCGACGAcaGCAAGCagguauuGACGGA-CGa -3' miRNA: 3'- gcCGCUGCU--CGUUCGgu-----CUGCCUaGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 42458 | 0.68 | 0.448483 |
Target: 5'- cCGGCG-CG-GCGAGCUgaaugguGGcACGGGUCGc -3' miRNA: 3'- -GCCGCuGCuCGUUCGG-------UC-UGCCUAGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 42855 | 0.69 | 0.430095 |
Target: 5'- aGGCGACGA---AGCCccuGACGGggCGu -3' miRNA: 3'- gCCGCUGCUcguUCGGu--CUGCCuaGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 44177 | 0.67 | 0.541922 |
Target: 5'- uCGGCGaAUGcAGCGAG-CAGugGGucuUCGa -3' miRNA: 3'- -GCCGC-UGC-UCGUUCgGUCugCCu--AGC- -5' |
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33045 | 5' | -56.8 | NC_007497.1 | + | 44603 | 0.71 | 0.309469 |
Target: 5'- cCGGCG-CcAGCccagAAGCCGGACGGGuUCGa -3' miRNA: 3'- -GCCGCuGcUCG----UUCGGUCUGCCU-AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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