miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 3' -53.3 NC_007497.1 + 24977 0.72 0.405732
Target:  5'- -gGCCAgGCGG-UCAACaGCGAucuGCACu -3'
miRNA:   3'- cgCGGUgCGCCaAGUUG-CGUUu--CGUG- -5'
33046 3' -53.3 NC_007497.1 + 25143 0.67 0.664983
Target:  5'- uGCGCCagagACGCGGUagaaCAGCuGCuccGGCAUa -3'
miRNA:   3'- -CGCGG----UGCGCCAa---GUUG-CGuu-UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 25711 0.66 0.747145
Target:  5'- uGCGCCcguccgaggugauuuGCGUcuugaucuGGUaCGACGCGGAGaCGCg -3'
miRNA:   3'- -CGCGG---------------UGCG--------CCAaGUUGCGUUUC-GUG- -5'
33046 3' -53.3 NC_007497.1 + 26314 0.68 0.630882
Target:  5'- gGCGUCGuCGCGGcUCGGCGUccGGCu- -3'
miRNA:   3'- -CGCGGU-GCGCCaAGUUGCGuuUCGug -5'
33046 3' -53.3 NC_007497.1 + 26529 0.66 0.742832
Target:  5'- cGCGCaCACGCG---CGACGU--AGCGCc -3'
miRNA:   3'- -CGCG-GUGCGCcaaGUUGCGuuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 26885 0.71 0.445112
Target:  5'- aCGCUgacgACGCGGUaCAgcuGCGCGguGAGCGCa -3'
miRNA:   3'- cGCGG----UGCGCCAaGU---UGCGU--UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 27192 0.7 0.518775
Target:  5'- cGCGCaAgGCGGggCGGCGCAucGGCGg -3'
miRNA:   3'- -CGCGgUgCGCCaaGUUGCGUu-UCGUg -5'
33046 3' -53.3 NC_007497.1 + 29255 0.71 0.435065
Target:  5'- uGCGCUACGUGGga-GGCGCcaauuGAGCGa -3'
miRNA:   3'- -CGCGGUGCGCCaagUUGCGu----UUCGUg -5'
33046 3' -53.3 NC_007497.1 + 29299 0.66 0.731969
Target:  5'- -gGCCguAUGgGGUUCGAUGU--GGCGCg -3'
miRNA:   3'- cgCGG--UGCgCCAAGUUGCGuuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 29501 0.72 0.425151
Target:  5'- gGCGagauaCCAguCGCGGaUCAACGCAuagcagucGAGCACg -3'
miRNA:   3'- -CGC-----GGU--GCGCCaAGUUGCGU--------UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 29709 0.71 0.476007
Target:  5'- uGCGCCGUGCcGUUCGgAUGCGAAuGCACc -3'
miRNA:   3'- -CGCGGUGCGcCAAGU-UGCGUUU-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 30100 0.66 0.774653
Target:  5'- gGUGCgaACGcCGGUUCGGCGUGAAuaACc -3'
miRNA:   3'- -CGCGg-UGC-GCCAAGUUGCGUUUcgUG- -5'
33046 3' -53.3 NC_007497.1 + 32702 0.76 0.231625
Target:  5'- cGCGgaucUCGCGCGGUUCGcuGCGCGAgcGGCAUu -3'
miRNA:   3'- -CGC----GGUGCGCCAAGU--UGCGUU--UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 33194 0.66 0.774653
Target:  5'- -gGCCGCGCGaaUCGACGCcuGAuCGCg -3'
miRNA:   3'- cgCGGUGCGCcaAGUUGCGu-UUcGUG- -5'
33046 3' -53.3 NC_007497.1 + 33420 0.68 0.653634
Target:  5'- cGCGUC-CGaUGGgcCAGCGC-AGGCGCa -3'
miRNA:   3'- -CGCGGuGC-GCCaaGUUGCGuUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 33520 0.68 0.642263
Target:  5'- -gGCCGCGCaGGUcgcgcguaUCGGCGuCAAuGCGCc -3'
miRNA:   3'- cgCGGUGCG-CCA--------AGUUGC-GUUuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 34641 0.67 0.708823
Target:  5'- uCGCCGCgGUGGcgccucgUUCGGCGCGcucGCGCg -3'
miRNA:   3'- cGCGGUG-CGCC-------AAGUUGCGUuu-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 34774 0.66 0.731969
Target:  5'- -gGCCGCgGCGGccucCAACGCGAcGCGu -3'
miRNA:   3'- cgCGGUG-CGCCaa--GUUGCGUUuCGUg -5'
33046 3' -53.3 NC_007497.1 + 34798 0.69 0.585475
Target:  5'- cGCGCUACGCGG--CGGCGCuc-GCu- -3'
miRNA:   3'- -CGCGGUGCGCCaaGUUGCGuuuCGug -5'
33046 3' -53.3 NC_007497.1 + 34808 0.69 0.596788
Target:  5'- uGCGCCaACGCcag-CGACGCcucGGCACg -3'
miRNA:   3'- -CGCGG-UGCGccaaGUUGCGuu-UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.