miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 3' -53.3 NC_007497.1 + 11545 0.69 0.556277
Target:  5'- uGCGCCuaugcGCGUGGUauuucgauucagcacUCAGCG-GGAGCGCc -3'
miRNA:   3'- -CGCGG-----UGCGCCA---------------AGUUGCgUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 11629 0.66 0.731969
Target:  5'- gGCGCCcagcgaugagugGCGUGGUaacUCGuCGCAAccucGCGCg -3'
miRNA:   3'- -CGCGG------------UGCGCCA---AGUuGCGUUu---CGUG- -5'
33046 3' -53.3 NC_007497.1 + 13130 0.68 0.630882
Target:  5'- cGCGCaCGCGCcag-CuuUGCGAAGCGCa -3'
miRNA:   3'- -CGCG-GUGCGccaaGuuGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 14054 0.68 0.652497
Target:  5'- uCGCCACGCucacgaaGG-UCGA-GCGAAGCAUc -3'
miRNA:   3'- cGCGGUGCG-------CCaAGUUgCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 14162 0.78 0.175817
Target:  5'- gGCGuCCACGCagcaGGuUUCAGCGUAGAGCAg -3'
miRNA:   3'- -CGC-GGUGCG----CC-AAGUUGCGUUUCGUg -5'
33046 3' -53.3 NC_007497.1 + 14562 0.66 0.753576
Target:  5'- cGCGaCUAcuuCGCGGcgaaggUGAUGCAAGGCGCu -3'
miRNA:   3'- -CGC-GGU---GCGCCaa----GUUGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 14734 0.67 0.664983
Target:  5'- -aGCCuGCGgaUGGUUCGuGCGCAcgAAGCGCa -3'
miRNA:   3'- cgCGG-UGC--GCCAAGU-UGCGU--UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 14832 0.67 0.687573
Target:  5'- uCGCUACGCuGUUCGcCGCAucGCcCa -3'
miRNA:   3'- cGCGGUGCGcCAAGUuGCGUuuCGuG- -5'
33046 3' -53.3 NC_007497.1 + 15165 1.13 0.000594
Target:  5'- cGCGCCACGCGGUUCAACGCAAAGCACa -3'
miRNA:   3'- -CGCGGUGCGCCAAGUUGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 15309 0.68 0.642263
Target:  5'- gGCGUC-CGCGGgau-GCGCcacAGGCGCg -3'
miRNA:   3'- -CGCGGuGCGCCaaguUGCGu--UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 15710 0.68 0.653634
Target:  5'- cUGCUACGUGcGUUgGACGguGggAGCGCg -3'
miRNA:   3'- cGCGGUGCGC-CAAgUUGCguU--UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 16271 0.66 0.774653
Target:  5'- -gGCCgGCGCGcuccGUUCAACaGCGgcGCACc -3'
miRNA:   3'- cgCGG-UGCGC----CAAGUUG-CGUuuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 16693 0.66 0.764187
Target:  5'- cGCGUCGCGUaGGaaggUCGACGau--GCACu -3'
miRNA:   3'- -CGCGGUGCG-CCa---AGUUGCguuuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 16746 0.74 0.325602
Target:  5'- aCGCgACGCGG-UC-ACGCGAgcGGCGCg -3'
miRNA:   3'- cGCGgUGCGCCaAGuUGCGUU--UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 17279 0.66 0.764187
Target:  5'- cUGCCuGCGCGGg-CGGCuGCGGGGCGg -3'
miRNA:   3'- cGCGG-UGCGCCaaGUUG-CGUUUCGUg -5'
33046 3' -53.3 NC_007497.1 + 21383 0.69 0.585475
Target:  5'- cCGgCGCGCGGUUCcauCGUcacccuccagAAGGCGCg -3'
miRNA:   3'- cGCgGUGCGCCAAGuu-GCG----------UUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 23172 0.72 0.415372
Target:  5'- aGCucucCCGCGCGcucgUCAACGCGgccGAGCACg -3'
miRNA:   3'- -CGc---GGUGCGCca--AGUUGCGU---UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 23515 0.66 0.731969
Target:  5'- cCGCCGCGCccagCAGCGCGAccaggagauacGGCAa -3'
miRNA:   3'- cGCGGUGCGccaaGUUGCGUU-----------UCGUg -5'
33046 3' -53.3 NC_007497.1 + 23862 0.72 0.405732
Target:  5'- gGCG-CGCGCGGcacUCAuccgGCGUGAAGCGCu -3'
miRNA:   3'- -CGCgGUGCGCCa--AGU----UGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 24428 0.7 0.518775
Target:  5'- -aGUCACGCGaaUCGACGUAAGcuGCACu -3'
miRNA:   3'- cgCGGUGCGCcaAGUUGCGUUU--CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.