miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 3' -53.3 NC_007497.1 + 425 0.67 0.676301
Target:  5'- cGCGCCACGauccaGGcgUCAucgucgcgacACGCGAcGCAg -3'
miRNA:   3'- -CGCGGUGCg----CCa-AGU----------UGCGUUuCGUg -5'
33046 3' -53.3 NC_007497.1 + 452 0.67 0.709934
Target:  5'- uGCGgCGCGCGGUUacgguuacgaAugGCAaAAGCuGCg -3'
miRNA:   3'- -CGCgGUGCGCCAAg---------UugCGU-UUCG-UG- -5'
33046 3' -53.3 NC_007497.1 + 951 0.68 0.653634
Target:  5'- cGCGCCguACGCGGUa-AugGCuGAAGCcCg -3'
miRNA:   3'- -CGCGG--UGCGCCAagUugCG-UUUCGuG- -5'
33046 3' -53.3 NC_007497.1 + 1320 0.67 0.687573
Target:  5'- uCGCgCugGCGuacUCGACGCAGcAGUACg -3'
miRNA:   3'- cGCG-GugCGCca-AGUUGCGUU-UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 1470 0.68 0.653634
Target:  5'- uGCGCCACGCcauaggagauuGGcUC-ACGCAuuacGGCAUc -3'
miRNA:   3'- -CGCGGUGCG-----------CCaAGuUGCGUu---UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 1975 0.67 0.709934
Target:  5'- aGCuGCC-UGCGGgccggcacaguUUCAA-GCGAAGCACg -3'
miRNA:   3'- -CG-CGGuGCGCC-----------AAGUUgCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 2443 0.66 0.774653
Target:  5'- uGCGCCgcugggcguucGCGCGG--CGACGCGccaucacGCGCa -3'
miRNA:   3'- -CGCGG-----------UGCGCCaaGUUGCGUuu-----CGUG- -5'
33046 3' -53.3 NC_007497.1 + 2512 0.71 0.476007
Target:  5'- uCGCCGCGCGaacgcccagCGGCGCAccGGCACu -3'
miRNA:   3'- cGCGGUGCGCcaa------GUUGCGUu-UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 2550 0.75 0.284201
Target:  5'- cGCGCCG-GCGGccgCGGCGCAuccuugcgauuuccGAGCGCg -3'
miRNA:   3'- -CGCGGUgCGCCaa-GUUGCGU--------------UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 2681 0.73 0.350954
Target:  5'- cUGCUugGgaaCGGUUCGGCGCAAgcgguuauccGGCACg -3'
miRNA:   3'- cGCGGugC---GCCAAGUUGCGUU----------UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 2898 0.66 0.753576
Target:  5'- -aGCaugCACGCGGUgcuGGCGCAuGGUGCg -3'
miRNA:   3'- cgCG---GUGCGCCAag-UUGCGUuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 3429 0.7 0.486541
Target:  5'- uGCGCCGCaCGGcugguUUCGAUGUccuGGAGCGCc -3'
miRNA:   3'- -CGCGGUGcGCC-----AAGUUGCG---UUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 3859 0.69 0.55182
Target:  5'- uGCGCCGC-CGGUUCucACGCcu-GCGu -3'
miRNA:   3'- -CGCGGUGcGCCAAGu-UGCGuuuCGUg -5'
33046 3' -53.3 NC_007497.1 + 4018 0.73 0.35971
Target:  5'- -gGCCgAUGCGGgUCGACGCc-GGCACg -3'
miRNA:   3'- cgCGG-UGCGCCaAGUUGCGuuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 4121 0.66 0.720999
Target:  5'- gGCGgUACgcgaGCGGUUCGgggACGCGGcggccgagacGGCACg -3'
miRNA:   3'- -CGCgGUG----CGCCAAGU---UGCGUU----------UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 4197 0.75 0.257839
Target:  5'- aGUGCCGCgaGCGGUUUAuggcugcgguGCGCGAcGCGCg -3'
miRNA:   3'- -CGCGGUG--CGCCAAGU----------UGCGUUuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 4209 0.66 0.753576
Target:  5'- gGCGCCAUGCGca-CGAaGCcGAGCAUc -3'
miRNA:   3'- -CGCGGUGCGCcaaGUUgCGuUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 4572 0.66 0.764187
Target:  5'- aGCGCCGCGUcuugcgUCGAucCGCcGAGCAUc -3'
miRNA:   3'- -CGCGGUGCGcca---AGUU--GCGuUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 4647 0.68 0.642263
Target:  5'- aUGCUcgGCGGaUCGACGCAAgacgcGGCGCu -3'
miRNA:   3'- cGCGGugCGCCaAGUUGCGUU-----UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 8574 0.67 0.709934
Target:  5'- aGCGCgGCcCGaaGUUCGugGCGGAGCu- -3'
miRNA:   3'- -CGCGgUGcGC--CAAGUugCGUUUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.