miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 3' -53.3 NC_007497.1 + 15165 1.13 0.000594
Target:  5'- cGCGCCACGCGGUUCAACGCAAAGCACa -3'
miRNA:   3'- -CGCGGUGCGCCAAGUUGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 39491 0.8 0.128538
Target:  5'- uGCGUguUGCGGUUCAuCGCGAAGCGg -3'
miRNA:   3'- -CGCGguGCGCCAAGUuGCGUUUCGUg -5'
33046 3' -53.3 NC_007497.1 + 14162 0.78 0.175817
Target:  5'- gGCGuCCACGCagcaGGuUUCAGCGUAGAGCAg -3'
miRNA:   3'- -CGC-GGUGCG----CC-AAGUUGCGUUUCGUg -5'
33046 3' -53.3 NC_007497.1 + 32702 0.76 0.231625
Target:  5'- cGCGgaucUCGCGCGGUUCGcuGCGCGAgcGGCAUu -3'
miRNA:   3'- -CGC----GGUGCGCCAAGU--UGCGUU--UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 4197 0.75 0.257839
Target:  5'- aGUGCCGCgaGCGGUUUAuggcugcgguGCGCGAcGCGCg -3'
miRNA:   3'- -CGCGGUG--CGCCAAGU----------UGCGUUuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 2550 0.75 0.284201
Target:  5'- cGCGCCG-GCGGccgCGGCGCAuccuugcgauuuccGAGCGCg -3'
miRNA:   3'- -CGCGGUgCGCCaa-GUUGCGU--------------UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 16746 0.74 0.325602
Target:  5'- aCGCgACGCGG-UC-ACGCGAgcGGCGCg -3'
miRNA:   3'- cGCGgUGCGCCaAGuUGCGUU--UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 37763 0.74 0.325602
Target:  5'- gGCGCUugGCGGagCGACGgGcGGCAa -3'
miRNA:   3'- -CGCGGugCGCCaaGUUGCgUuUCGUg -5'
33046 3' -53.3 NC_007497.1 + 2681 0.73 0.350954
Target:  5'- cUGCUugGgaaCGGUUCGGCGCAAgcgguuauccGGCACg -3'
miRNA:   3'- cGCGGugC---GCCAAGUUGCGUU----------UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 4018 0.73 0.35971
Target:  5'- -gGCCgAUGCGGgUCGACGCc-GGCACg -3'
miRNA:   3'- cgCGG-UGCGCCaAGUUGCGuuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 41164 0.72 0.377676
Target:  5'- gGCGUCACcgcgaaGCGGaUCAGCGC--GGCGCu -3'
miRNA:   3'- -CGCGGUG------CGCCaAGUUGCGuuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 24977 0.72 0.405732
Target:  5'- -gGCCAgGCGG-UCAACaGCGAucuGCACu -3'
miRNA:   3'- cgCGGUgCGCCaAGUUG-CGUUu--CGUG- -5'
33046 3' -53.3 NC_007497.1 + 23862 0.72 0.405732
Target:  5'- gGCG-CGCGCGGcacUCAuccgGCGUGAAGCGCu -3'
miRNA:   3'- -CGCgGUGCGCCa--AGU----UGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 23172 0.72 0.415372
Target:  5'- aGCucucCCGCGCGcucgUCAACGCGgccGAGCACg -3'
miRNA:   3'- -CGc---GGUGCGCca--AGUUGCGU---UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 29501 0.72 0.425151
Target:  5'- gGCGagauaCCAguCGCGGaUCAACGCAuagcagucGAGCACg -3'
miRNA:   3'- -CGC-----GGU--GCGCCaAGUUGCGU--------UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 29255 0.71 0.435065
Target:  5'- uGCGCUACGUGGga-GGCGCcaauuGAGCGa -3'
miRNA:   3'- -CGCGGUGCGCCaagUUGCGu----UUCGUg -5'
33046 3' -53.3 NC_007497.1 + 26885 0.71 0.445112
Target:  5'- aCGCUgacgACGCGGUaCAgcuGCGCGguGAGCGCa -3'
miRNA:   3'- cGCGG----UGCGCCAaGU---UGCGU--UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 2512 0.71 0.476007
Target:  5'- uCGCCGCGCGaacgcccagCGGCGCAccGGCACu -3'
miRNA:   3'- cGCGGUGCGCcaa------GUUGCGUu-UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 29709 0.71 0.476007
Target:  5'- uGCGCCGUGCcGUUCGgAUGCGAAuGCACc -3'
miRNA:   3'- -CGCGGUGCGcCAAGU-UGCGUUU-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 3429 0.7 0.486541
Target:  5'- uGCGCCGCaCGGcugguUUCGAUGUccuGGAGCGCc -3'
miRNA:   3'- -CGCGGUGcGCC-----AAGUUGCG---UUUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.