miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 3' -53.3 NC_007497.1 + 14832 0.67 0.687573
Target:  5'- uCGCUACGCuGUUCGcCGCAucGCcCa -3'
miRNA:   3'- cGCGGUGCGcCAAGUuGCGUuuCGuG- -5'
33046 3' -53.3 NC_007497.1 + 26314 0.68 0.630882
Target:  5'- gGCGUCGuCGCGGcUCGGCGUccGGCu- -3'
miRNA:   3'- -CGCGGU-GCGCCaAGUUGCGuuUCGug -5'
33046 3' -53.3 NC_007497.1 + 14054 0.68 0.652497
Target:  5'- uCGCCACGCucacgaaGG-UCGA-GCGAAGCAUc -3'
miRNA:   3'- cGCGGUGCG-------CCaAGUUgCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 33420 0.68 0.653634
Target:  5'- cGCGUC-CGaUGGgcCAGCGC-AGGCGCa -3'
miRNA:   3'- -CGCGGuGC-GCCaaGUUGCGuUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 951 0.68 0.653634
Target:  5'- cGCGCCguACGCGGUa-AugGCuGAAGCcCg -3'
miRNA:   3'- -CGCGG--UGCGCCAagUugCG-UUUCGuG- -5'
33046 3' -53.3 NC_007497.1 + 36897 0.68 0.653634
Target:  5'- cCGCCA-GCgGGUUCAgaauugcgGCGCGGAuGCGCc -3'
miRNA:   3'- cGCGGUgCG-CCAAGU--------UGCGUUU-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 14734 0.67 0.664983
Target:  5'- -aGCCuGCGgaUGGUUCGuGCGCAcgAAGCGCa -3'
miRNA:   3'- cgCGG-UGC--GCCAAGU-UGCGU--UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 25143 0.67 0.664983
Target:  5'- uGCGCCagagACGCGGUagaaCAGCuGCuccGGCAUa -3'
miRNA:   3'- -CGCGG----UGCGCCAa---GUUG-CGuu-UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 425 0.67 0.676301
Target:  5'- cGCGCCACGauccaGGcgUCAucgucgcgacACGCGAcGCAg -3'
miRNA:   3'- -CGCGGUGCg----CCa-AGU----------UGCGUUuCGUg -5'
33046 3' -53.3 NC_007497.1 + 41341 0.68 0.630882
Target:  5'- -gGCgAC-CGGaucgUCAGCGCGAGGCAa -3'
miRNA:   3'- cgCGgUGcGCCa---AGUUGCGUUUCGUg -5'
33046 3' -53.3 NC_007497.1 + 41443 0.68 0.608134
Target:  5'- aGCgGCUugGUcGUUCAGCGUGccGCGCa -3'
miRNA:   3'- -CG-CGGugCGcCAAGUUGCGUuuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 34808 0.69 0.596788
Target:  5'- uGCGCCaACGCcag-CGACGCcucGGCACg -3'
miRNA:   3'- -CGCGG-UGCGccaaGUUGCGuu-UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 2550 0.75 0.284201
Target:  5'- cGCGCCG-GCGGccgCGGCGCAuccuugcgauuuccGAGCGCg -3'
miRNA:   3'- -CGCGGUgCGCCaa-GUUGCGU--------------UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 23862 0.72 0.405732
Target:  5'- gGCG-CGCGCGGcacUCAuccgGCGUGAAGCGCu -3'
miRNA:   3'- -CGCgGUGCGCCa--AGU----UGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 23172 0.72 0.415372
Target:  5'- aGCucucCCGCGCGcucgUCAACGCGgccGAGCACg -3'
miRNA:   3'- -CGc---GGUGCGCca--AGUUGCGU---UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 29501 0.72 0.425151
Target:  5'- gGCGagauaCCAguCGCGGaUCAACGCAuagcagucGAGCACg -3'
miRNA:   3'- -CGC-----GGU--GCGCCaAGUUGCGU--------UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 26885 0.71 0.445112
Target:  5'- aCGCUgacgACGCGGUaCAgcuGCGCGguGAGCGCa -3'
miRNA:   3'- cGCGG----UGCGCCAaGU---UGCGU--UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 29709 0.71 0.476007
Target:  5'- uGCGCCGUGCcGUUCGgAUGCGAAuGCACc -3'
miRNA:   3'- -CGCGGUGCGcCAAGU-UGCGUUU-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 24428 0.7 0.518775
Target:  5'- -aGUCACGCGaaUCGACGUAAGcuGCACu -3'
miRNA:   3'- cgCGGUGCGCcaAGUUGCGUUU--CGUG- -5'
33046 3' -53.3 NC_007497.1 + 41244 0.69 0.585475
Target:  5'- cGCGCCAaGcCGGUggUCAGCGCGAAucucagguaguuGCAg -3'
miRNA:   3'- -CGCGGUgC-GCCA--AGUUGCGUUU------------CGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.