miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 3' -53.3 NC_007497.1 + 44500 0.68 0.642263
Target:  5'- -aGCCGaaauUGCGGaUCGAUGCGgcgaAAGCGCu -3'
miRNA:   3'- cgCGGU----GCGCCaAGUUGCGU----UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 43425 0.66 0.720999
Target:  5'- cGUuCCA-GCaGUUCAuCGCGAAGCACc -3'
miRNA:   3'- -CGcGGUgCGcCAAGUuGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 42716 0.67 0.687573
Target:  5'- cCGCUgaugGCGCuGUUUAACGCAGucucgcucauGGCGCu -3'
miRNA:   3'- cGCGG----UGCGcCAAGUUGCGUU----------UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 41443 0.68 0.608134
Target:  5'- aGCgGCUugGUcGUUCAGCGUGccGCGCa -3'
miRNA:   3'- -CG-CGGugCGcCAAGUUGCGUuuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 41341 0.68 0.630882
Target:  5'- -gGCgAC-CGGaucgUCAGCGCGAGGCAa -3'
miRNA:   3'- cgCGgUGcGCCa---AGUUGCGUUUCGUg -5'
33046 3' -53.3 NC_007497.1 + 41244 0.69 0.585475
Target:  5'- cGCGCCAaGcCGGUggUCAGCGCGAAucucagguaguuGCAg -3'
miRNA:   3'- -CGCGGUgC-GCCA--AGUUGCGUUU------------CGUg -5'
33046 3' -53.3 NC_007497.1 + 41164 0.72 0.377676
Target:  5'- gGCGUCACcgcgaaGCGGaUCAGCGC--GGCGCu -3'
miRNA:   3'- -CGCGGUG------CGCCaAGUUGCGuuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 40595 0.66 0.720999
Target:  5'- cCGgCGCGCGccaUCGACGCuucgauGAGCGCc -3'
miRNA:   3'- cGCgGUGCGCca-AGUUGCGu-----UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 40223 0.67 0.698788
Target:  5'- -gGCCAacaucaagauCGCGG--CAGCGCAGaugGGCGCg -3'
miRNA:   3'- cgCGGU----------GCGCCaaGUUGCGUU---UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 39491 0.8 0.128538
Target:  5'- uGCGUguUGCGGUUCAuCGCGAAGCGg -3'
miRNA:   3'- -CGCGguGCGCCAAGUuGCGUUUCGUg -5'
33046 3' -53.3 NC_007497.1 + 39043 0.69 0.596788
Target:  5'- gGUGCCcgaGCGG-UCGGCGCAcuggaGGGUGCg -3'
miRNA:   3'- -CGCGGug-CGCCaAGUUGCGU-----UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 38222 0.68 0.653634
Target:  5'- cGCGCCACGgucgcCGGcgCgAACGUgauccgggacGAGGCGCg -3'
miRNA:   3'- -CGCGGUGC-----GCCaaG-UUGCG----------UUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 37763 0.74 0.325602
Target:  5'- gGCGCUugGCGGagCGACGgGcGGCAa -3'
miRNA:   3'- -CGCGGugCGCCaaGUUGCgUuUCGUg -5'
33046 3' -53.3 NC_007497.1 + 37044 0.68 0.608134
Target:  5'- gGCGCCGCcgGCGGgcugaUCAcuGCGCGAAcUACa -3'
miRNA:   3'- -CGCGGUG--CGCCa----AGU--UGCGUUUcGUG- -5'
33046 3' -53.3 NC_007497.1 + 36897 0.68 0.653634
Target:  5'- cCGCCA-GCgGGUUCAgaauugcgGCGCGGAuGCGCc -3'
miRNA:   3'- cGCGGUgCG-CCAAGU--------UGCGUUU-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 36698 0.66 0.753576
Target:  5'- cGCGCgUACGCGaGcUUguGCGCGucuGCACu -3'
miRNA:   3'- -CGCG-GUGCGC-C-AAguUGCGUuu-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 36652 0.66 0.764187
Target:  5'- aCGCCACcccuggGCGGUcUCGACaUAcAGCACg -3'
miRNA:   3'- cGCGGUG------CGCCA-AGUUGcGUuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 36397 0.7 0.518775
Target:  5'- cGCGUCG-GCaGUUUuccaGGCGCAGGGCGCg -3'
miRNA:   3'- -CGCGGUgCGcCAAG----UUGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 35890 0.7 0.507931
Target:  5'- cGCGCaagcaACGCGGagccgcUCGACGCGAcGGCGg -3'
miRNA:   3'- -CGCGg----UGCGCCa-----AGUUGCGUU-UCGUg -5'
33046 3' -53.3 NC_007497.1 + 35650 0.67 0.676301
Target:  5'- uUGCCcgGCGUGGc-CGACGCGAucGCGCg -3'
miRNA:   3'- cGCGG--UGCGCCaaGUUGCGUUu-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.