miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 3' -53.3 NC_007497.1 + 4647 0.68 0.642263
Target:  5'- aUGCUcgGCGGaUCGACGCAAgacgcGGCGCu -3'
miRNA:   3'- cGCGGugCGCCaAGUUGCGUU-----UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 15309 0.68 0.642263
Target:  5'- gGCGUC-CGCGGgau-GCGCcacAGGCGCg -3'
miRNA:   3'- -CGCGGuGCGCCaaguUGCGu--UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 33520 0.68 0.642263
Target:  5'- -gGCCGCGCaGGUcgcgcguaUCGGCGuCAAuGCGCc -3'
miRNA:   3'- cgCGGUGCG-CCA--------AGUUGC-GUUuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 44500 0.68 0.642263
Target:  5'- -aGCCGaaauUGCGGaUCGAUGCGgcgaAAGCGCu -3'
miRNA:   3'- cgCGGU----GCGCCaAGUUGCGU----UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 13130 0.68 0.630882
Target:  5'- cGCGCaCGCGCcag-CuuUGCGAAGCGCa -3'
miRNA:   3'- -CGCG-GUGCGccaaGuuGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 26314 0.68 0.630882
Target:  5'- gGCGUCGuCGCGGcUCGGCGUccGGCu- -3'
miRNA:   3'- -CGCGGU-GCGCCaAGUUGCGuuUCGug -5'
33046 3' -53.3 NC_007497.1 + 41341 0.68 0.630882
Target:  5'- -gGCgAC-CGGaucgUCAGCGCGAGGCAa -3'
miRNA:   3'- cgCGgUGcGCCa---AGUUGCGUUUCGUg -5'
33046 3' -53.3 NC_007497.1 + 37044 0.68 0.608134
Target:  5'- gGCGCCGCcgGCGGgcugaUCAcuGCGCGAAcUACa -3'
miRNA:   3'- -CGCGGUG--CGCCa----AGU--UGCGUUUcGUG- -5'
33046 3' -53.3 NC_007497.1 + 41443 0.68 0.608134
Target:  5'- aGCgGCUugGUcGUUCAGCGUGccGCGCa -3'
miRNA:   3'- -CG-CGGugCGcCAAGUUGCGUuuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 34808 0.69 0.596788
Target:  5'- uGCGCCaACGCcag-CGACGCcucGGCACg -3'
miRNA:   3'- -CGCGG-UGCGccaaGUUGCGuu-UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 39043 0.69 0.596788
Target:  5'- gGUGCCcgaGCGG-UCGGCGCAcuggaGGGUGCg -3'
miRNA:   3'- -CGCGGug-CGCCaAGUUGCGU-----UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 41244 0.69 0.585475
Target:  5'- cGCGCCAaGcCGGUggUCAGCGCGAAucucagguaguuGCAg -3'
miRNA:   3'- -CGCGGUgC-GCCA--AGUUGCGUUU------------CGUg -5'
33046 3' -53.3 NC_007497.1 + 21383 0.69 0.585475
Target:  5'- cCGgCGCGCGGUUCcauCGUcacccuccagAAGGCGCg -3'
miRNA:   3'- cGCgGUGCGCCAAGuu-GCG----------UUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 34798 0.69 0.585475
Target:  5'- cGCGCUACGCGG--CGGCGCuc-GCu- -3'
miRNA:   3'- -CGCGGUGCGCCaaGUUGCGuuuCGug -5'
33046 3' -53.3 NC_007497.1 + 11545 0.69 0.556277
Target:  5'- uGCGCCuaugcGCGUGGUauuucgauucagcacUCAGCG-GGAGCGCc -3'
miRNA:   3'- -CGCGG-----UGCGCCA---------------AGUUGCgUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 3859 0.69 0.55182
Target:  5'- uGCGCCGC-CGGUUCucACGCcu-GCGu -3'
miRNA:   3'- -CGCGGUGcGCCAAGu-UGCGuuuCGUg -5'
33046 3' -53.3 NC_007497.1 + 36397 0.7 0.518775
Target:  5'- cGCGUCG-GCaGUUUuccaGGCGCAGGGCGCg -3'
miRNA:   3'- -CGCGGUgCGcCAAG----UUGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 27192 0.7 0.518775
Target:  5'- cGCGCaAgGCGGggCGGCGCAucGGCGg -3'
miRNA:   3'- -CGCGgUgCGCCaaGUUGCGUu-UCGUg -5'
33046 3' -53.3 NC_007497.1 + 24428 0.7 0.518775
Target:  5'- -aGUCACGCGaaUCGACGUAAGcuGCACu -3'
miRNA:   3'- cgCGGUGCGCcaAGUUGCGUUU--CGUG- -5'
33046 3' -53.3 NC_007497.1 + 35890 0.7 0.507931
Target:  5'- cGCGCaagcaACGCGGagccgcUCGACGCGAcGGCGg -3'
miRNA:   3'- -CGCGg----UGCGCCa-----AGUUGCGUU-UCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.