miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 3' -53.3 NC_007497.1 + 40595 0.66 0.720999
Target:  5'- cCGgCGCGCGccaUCGACGCuucgauGAGCGCc -3'
miRNA:   3'- cGCgGUGCGCca-AGUUGCGu-----UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 1975 0.67 0.709934
Target:  5'- aGCuGCC-UGCGGgccggcacaguUUCAA-GCGAAGCACg -3'
miRNA:   3'- -CG-CGGuGCGCC-----------AAGUUgCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 8574 0.67 0.709934
Target:  5'- aGCGCgGCcCGaaGUUCGugGCGGAGCu- -3'
miRNA:   3'- -CGCGgUGcGC--CAAGUugCGUUUCGug -5'
33046 3' -53.3 NC_007497.1 + 452 0.67 0.709934
Target:  5'- uGCGgCGCGCGGUUacgguuacgaAugGCAaAAGCuGCg -3'
miRNA:   3'- -CGCgGUGCGCCAAg---------UugCGU-UUCG-UG- -5'
33046 3' -53.3 NC_007497.1 + 34641 0.67 0.708823
Target:  5'- uCGCCGCgGUGGcgccucgUUCGGCGCGcucGCGCg -3'
miRNA:   3'- cGCGGUG-CGCC-------AAGUUGCGUuu-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 40223 0.67 0.698788
Target:  5'- -gGCCAacaucaagauCGCGG--CAGCGCAGaugGGCGCg -3'
miRNA:   3'- cgCGGU----------GCGCCaaGUUGCGUU---UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 42716 0.67 0.687573
Target:  5'- cCGCUgaugGCGCuGUUUAACGCAGucucgcucauGGCGCu -3'
miRNA:   3'- cGCGG----UGCGcCAAGUUGCGUU----------UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 14832 0.67 0.687573
Target:  5'- uCGCUACGCuGUUCGcCGCAucGCcCa -3'
miRNA:   3'- cGCGGUGCGcCAAGUuGCGUuuCGuG- -5'
33046 3' -53.3 NC_007497.1 + 1320 0.67 0.687573
Target:  5'- uCGCgCugGCGuacUCGACGCAGcAGUACg -3'
miRNA:   3'- cGCG-GugCGCca-AGUUGCGUU-UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 35650 0.67 0.676301
Target:  5'- uUGCCcgGCGUGGc-CGACGCGAucGCGCg -3'
miRNA:   3'- cGCGG--UGCGCCaaGUUGCGUUu-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 425 0.67 0.676301
Target:  5'- cGCGCCACGauccaGGcgUCAucgucgcgacACGCGAcGCAg -3'
miRNA:   3'- -CGCGGUGCg----CCa-AGU----------UGCGUUuCGUg -5'
33046 3' -53.3 NC_007497.1 + 14734 0.67 0.664983
Target:  5'- -aGCCuGCGgaUGGUUCGuGCGCAcgAAGCGCa -3'
miRNA:   3'- cgCGG-UGC--GCCAAGU-UGCGU--UUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 25143 0.67 0.664983
Target:  5'- uGCGCCagagACGCGGUagaaCAGCuGCuccGGCAUa -3'
miRNA:   3'- -CGCGG----UGCGCCAa---GUUG-CGuu-UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 36897 0.68 0.653634
Target:  5'- cCGCCA-GCgGGUUCAgaauugcgGCGCGGAuGCGCc -3'
miRNA:   3'- cGCGGUgCG-CCAAGU--------UGCGUUU-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 1470 0.68 0.653634
Target:  5'- uGCGCCACGCcauaggagauuGGcUC-ACGCAuuacGGCAUc -3'
miRNA:   3'- -CGCGGUGCG-----------CCaAGuUGCGUu---UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 15710 0.68 0.653634
Target:  5'- cUGCUACGUGcGUUgGACGguGggAGCGCg -3'
miRNA:   3'- cGCGGUGCGC-CAAgUUGCguU--UCGUG- -5'
33046 3' -53.3 NC_007497.1 + 951 0.68 0.653634
Target:  5'- cGCGCCguACGCGGUa-AugGCuGAAGCcCg -3'
miRNA:   3'- -CGCGG--UGCGCCAagUugCG-UUUCGuG- -5'
33046 3' -53.3 NC_007497.1 + 33420 0.68 0.653634
Target:  5'- cGCGUC-CGaUGGgcCAGCGC-AGGCGCa -3'
miRNA:   3'- -CGCGGuGC-GCCaaGUUGCGuUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 38222 0.68 0.653634
Target:  5'- cGCGCCACGgucgcCGGcgCgAACGUgauccgggacGAGGCGCg -3'
miRNA:   3'- -CGCGGUGC-----GCCaaG-UUGCG----------UUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 14054 0.68 0.652497
Target:  5'- uCGCCACGCucacgaaGG-UCGA-GCGAAGCAUc -3'
miRNA:   3'- cGCGGUGCG-------CCaAGUUgCGUUUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.