Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33047 | 3' | -53.9 | NC_007497.1 | + | 34944 | 0.67 | 0.652016 |
Target: 5'- uCGCcGGGAcGCCGuAUGCGGCCguGAUCg -3' miRNA: 3'- -GCGuCUCUuUGGUcUGCGUCGG--CUAG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 35150 | 0.67 | 0.663328 |
Target: 5'- gGCGGcGGAggUCGcGGCGCAGgCCGAg- -3' miRNA: 3'- gCGUC-UCUuuGGU-CUGCGUC-GGCUag -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 35197 | 0.67 | 0.640684 |
Target: 5'- gCGCGGAGcGAUCGcGAUGCGGCUGcggCg -3' miRNA: 3'- -GCGUCUCuUUGGU-CUGCGUCGGCua-G- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 35664 | 0.67 | 0.652016 |
Target: 5'- gCGUucuGGAGGAauuGCCcGGCGUGGCCGAc- -3' miRNA: 3'- -GCG---UCUCUU---UGGuCUGCGUCGGCUag -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 41972 | 0.67 | 0.640684 |
Target: 5'- aGCGGAGcAAGCCGaGCGC-GCCGcuUCa -3' miRNA: 3'- gCGUCUC-UUUGGUcUGCGuCGGCu-AG- -5' |
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33047 | 3' | -53.9 | NC_007497.1 | + | 44608 | 0.68 | 0.594251 |
Target: 5'- aGCAGccggcgccagcccAGAAGCCGGACGgGuUCGAUCu -3' miRNA: 3'- gCGUC-------------UCUUUGGUCUGCgUcGGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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