miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33051 5' -54.5 NC_007497.1 + 917 0.66 0.715749
Target:  5'- gUCAGCaagcaGAACGCCG-CgGUUCGg -3'
miRNA:   3'- -AGUCGcuaagCUUGCGGCgGgCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 1159 0.66 0.737173
Target:  5'- gCAGUGAUcaUCGcgcGCGCUGCCCc-UCGu -3'
miRNA:   3'- aGUCGCUA--AGCu--UGCGGCGGGcaAGC- -5'
33051 5' -54.5 NC_007497.1 + 3876 0.84 0.064897
Target:  5'- aUCAGCGAUgggaUCGAuGCGCCGCCgGUUCu -3'
miRNA:   3'- -AGUCGCUA----AGCU-UGCGGCGGgCAAGc -5'
33051 5' -54.5 NC_007497.1 + 4644 0.67 0.671982
Target:  5'- cUCGGCGGaUCGAcgcaagacGCGgCGCUCGUUg- -3'
miRNA:   3'- -AGUCGCUaAGCU--------UGCgGCGGGCAAgc -5'
33051 5' -54.5 NC_007497.1 + 8685 0.68 0.605389
Target:  5'- -gGGCGcgUCG---GCCGCCCGgUCGu -3'
miRNA:   3'- agUCGCuaAGCuugCGGCGGGCaAGC- -5'
33051 5' -54.5 NC_007497.1 + 10356 0.69 0.539604
Target:  5'- cUUAGCGGcucgccucUCGAACGcCCGCCUGgaCGa -3'
miRNA:   3'- -AGUCGCUa-------AGCUUGC-GGCGGGCaaGC- -5'
33051 5' -54.5 NC_007497.1 + 12823 0.68 0.605389
Target:  5'- -gAGCGGUgUCGGGCGCUacCCCGUuucUCGg -3'
miRNA:   3'- agUCGCUA-AGCUUGCGGc-GGGCA---AGC- -5'
33051 5' -54.5 NC_007497.1 + 14482 0.66 0.737173
Target:  5'- aCAGCGAccUGAACGCCaucGCaCCGaaCGg -3'
miRNA:   3'- aGUCGCUaaGCUUGCGG---CG-GGCaaGC- -5'
33051 5' -54.5 NC_007497.1 + 16187 0.67 0.646491
Target:  5'- aCGGCGAcguucUUCGAAaccgugugggcCGCCGCCgaggcugugugcuuCGUUCGc -3'
miRNA:   3'- aGUCGCU-----AAGCUU-----------GCGGCGG--------------GCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 16890 0.66 0.726509
Target:  5'- -aGGCGGUUCGAuguGCUGCCCu---- -3'
miRNA:   3'- agUCGCUAAGCUug-CGGCGGGcaagc -5'
33051 5' -54.5 NC_007497.1 + 17025 1.09 0.001068
Target:  5'- uUCAGCGAUUCGAACGCCGCCCGUUCGu -3'
miRNA:   3'- -AGUCGCUAAGCUUGCGGCGGGCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 17471 0.69 0.52778
Target:  5'- gUCGGCGGgaucguggagccaUgcgcuugaugaUCGAGaCGCCGCCCGcgCGg -3'
miRNA:   3'- -AGUCGCU-------------A-----------AGCUU-GCGGCGGGCaaGC- -5'
33051 5' -54.5 NC_007497.1 + 19080 0.66 0.715749
Target:  5'- gCAGCGGcUUCGAgaGCGgCGCgaaGUUCGg -3'
miRNA:   3'- aGUCGCU-AAGCU--UGCgGCGgg-CAAGC- -5'
33051 5' -54.5 NC_007497.1 + 21406 0.67 0.649823
Target:  5'- cUAGCGAcagCGAGCugaGCCGUCCGgcgCGc -3'
miRNA:   3'- aGUCGCUaa-GCUUG---CGGCGGGCaa-GC- -5'
33051 5' -54.5 NC_007497.1 + 21662 0.66 0.74773
Target:  5'- aUCAGCGuggGUUCGccccuauugacGACGCCGCCgcUGaUCGc -3'
miRNA:   3'- -AGUCGC---UAAGC-----------UUGCGGCGG--GCaAGC- -5'
33051 5' -54.5 NC_007497.1 + 24538 0.67 0.660916
Target:  5'- aCGGCGg--CGAAgGCCGUCCGa--- -3'
miRNA:   3'- aGUCGCuaaGCUUgCGGCGGGCaagc -5'
33051 5' -54.5 NC_007497.1 + 25681 0.68 0.605389
Target:  5'- cCAGCGGUUCGccGugGUCGaCCCGa--- -3'
miRNA:   3'- aGUCGCUAAGC--UugCGGC-GGGCaagc -5'
33051 5' -54.5 NC_007497.1 + 25698 0.67 0.649823
Target:  5'- cCAGCGAUgu--ACGUgCGCCCGUcCGa -3'
miRNA:   3'- aGUCGCUAagcuUGCG-GCGGGCAaGC- -5'
33051 5' -54.5 NC_007497.1 + 27091 0.67 0.670877
Target:  5'- aCGGCGAUccugccgUCGGGCGUCGCacagucgcgcgCCGUgaagUCGg -3'
miRNA:   3'- aGUCGCUA-------AGCUUGCGGCG-----------GGCA----AGC- -5'
33051 5' -54.5 NC_007497.1 + 27614 0.66 0.693987
Target:  5'- -aGGCGAaUCGcggcucGACGCCGCCUuUUCc -3'
miRNA:   3'- agUCGCUaAGC------UUGCGGCGGGcAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.