miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33051 5' -54.5 NC_007497.1 + 14482 0.66 0.737173
Target:  5'- aCAGCGAccUGAACGCCaucGCaCCGaaCGg -3'
miRNA:   3'- aGUCGCUaaGCUUGCGG---CG-GGCaaGC- -5'
33051 5' -54.5 NC_007497.1 + 16187 0.67 0.646491
Target:  5'- aCGGCGAcguucUUCGAAaccgugugggcCGCCGCCgaggcugugugcuuCGUUCGc -3'
miRNA:   3'- aGUCGCU-----AAGCUU-----------GCGGCGG--------------GCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 41852 0.67 0.649823
Target:  5'- uUCGGaaccUCGAugGCGCCGCCCGccaucacgccagUUCGg -3'
miRNA:   3'- -AGUCgcuaAGCU--UGCGGCGGGC------------AAGC- -5'
33051 5' -54.5 NC_007497.1 + 25698 0.67 0.649823
Target:  5'- cCAGCGAUgu--ACGUgCGCCCGUcCGa -3'
miRNA:   3'- aGUCGCUAagcuUGCG-GCGGGCAaGC- -5'
33051 5' -54.5 NC_007497.1 + 38120 0.67 0.659808
Target:  5'- uUCGGUGcg-CGAGCGCgCGCCucgucccggaucaCGUUCGc -3'
miRNA:   3'- -AGUCGCuaaGCUUGCG-GCGG-------------GCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 24538 0.67 0.660916
Target:  5'- aCGGCGg--CGAAgGCCGUCCGa--- -3'
miRNA:   3'- aGUCGCuaaGCUUgCGGCGGGCaagc -5'
33051 5' -54.5 NC_007497.1 + 27614 0.66 0.693987
Target:  5'- -aGGCGAaUCGcggcucGACGCCGCCUuUUCc -3'
miRNA:   3'- agUCGCUaAGC------UUGCGGCGGGcAAGc -5'
33051 5' -54.5 NC_007497.1 + 39833 0.66 0.704904
Target:  5'- cUCAGCGGcUgGAACGuaGCCgCGUUgGu -3'
miRNA:   3'- -AGUCGCUaAgCUUGCggCGG-GCAAgC- -5'
33051 5' -54.5 NC_007497.1 + 16890 0.66 0.726509
Target:  5'- -aGGCGGUUCGAuguGCUGCCCu---- -3'
miRNA:   3'- agUCGCUAAGCUug-CGGCGGGcaagc -5'
33051 5' -54.5 NC_007497.1 + 34723 0.68 0.583273
Target:  5'- uUCGGUuucagCGAGCGCCGCCgCGUa-- -3'
miRNA:   3'- -AGUCGcuaa-GCUUGCGGCGG-GCAagc -5'
33051 5' -54.5 NC_007497.1 + 33394 0.68 0.583273
Target:  5'- cCGGCucggaaCGGGCGCCGCCCGcccgCGu -3'
miRNA:   3'- aGUCGcuaa--GCUUGCGGCGGGCaa--GC- -5'
33051 5' -54.5 NC_007497.1 + 28694 0.68 0.583273
Target:  5'- aUCAGCGGcaCGGGCucccccugaGCCGCgCUGUUCa -3'
miRNA:   3'- -AGUCGCUaaGCUUG---------CGGCG-GGCAAGc -5'
33051 5' -54.5 NC_007497.1 + 29693 0.72 0.389198
Target:  5'- aUCGGCcAUgcUCGGcuGCGCCGUgCCGUUCGg -3'
miRNA:   3'- -AGUCGcUA--AGCU--UGCGGCG-GGCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 39503 0.71 0.436386
Target:  5'- uUCAucGCGAagCGGGCGuuGCCCGUgaacgcgcUCGg -3'
miRNA:   3'- -AGU--CGCUaaGCUUGCggCGGGCA--------AGC- -5'
33051 5' -54.5 NC_007497.1 + 37912 0.7 0.507592
Target:  5'- -gAGCGAUcgacgcUCGAACGCCGgCCGc--- -3'
miRNA:   3'- agUCGCUA------AGCUUGCGGCgGGCaagc -5'
33051 5' -54.5 NC_007497.1 + 36842 0.69 0.518178
Target:  5'- aCAGCGA--CGGuaACGCCGuCCCaUUCGg -3'
miRNA:   3'- aGUCGCUaaGCU--UGCGGC-GGGcAAGC- -5'
33051 5' -54.5 NC_007497.1 + 17471 0.69 0.52778
Target:  5'- gUCGGCGGgaucguggagccaUgcgcuugaugaUCGAGaCGCCGCCCGcgCGg -3'
miRNA:   3'- -AGUCGCU-------------A-----------AGCUU-GCGGCGGGCaaGC- -5'
33051 5' -54.5 NC_007497.1 + 34634 0.69 0.528851
Target:  5'- cCGGCGGUcgccgCGGugG-CGCCuCGUUCGg -3'
miRNA:   3'- aGUCGCUAa----GCUugCgGCGG-GCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 10356 0.69 0.539604
Target:  5'- cUUAGCGGcucgccucUCGAACGcCCGCCUGgaCGa -3'
miRNA:   3'- -AGUCGCUa-------AGCUUGC-GGCGGGCaaGC- -5'
33051 5' -54.5 NC_007497.1 + 28997 0.69 0.55478
Target:  5'- uUCGGCGGccguugaacacagCGAACGUCaGCCCGUugUCGc -3'
miRNA:   3'- -AGUCGCUaa-----------GCUUGCGG-CGGGCA--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.