Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33055 | 5' | -61.6 | NC_007497.1 | + | 7166 | 0.71 | 0.164256 |
Target: 5'- -uGGCGGGCUgGAGCCGagcaacgcgaagaUCaGGUGCGCc -3' miRNA: 3'- ugUCGCUCGA-CUCGGC-------------AGgCCGCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 475 | 0.69 | 0.208648 |
Target: 5'- -uGGCGcGCUggcaaGAGCagcaGUgCGGCGCGCg -3' miRNA: 3'- ugUCGCuCGA-----CUCGg---CAgGCCGCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 39275 | 0.68 | 0.237212 |
Target: 5'- gGCGGCGGccuGCUGAauCCGgagCCGauGCGCGCg -3' miRNA: 3'- -UGUCGCU---CGACUc-GGCa--GGC--CGCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 15193 | 0.68 | 0.237212 |
Target: 5'- cGCuGCGGuGUUGAGCUucggGUagCGGCGCGCc -3' miRNA: 3'- -UGuCGCU-CGACUCGG----CAg-GCCGCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 28271 | 0.68 | 0.262363 |
Target: 5'- uGCAGaaGAGUgacccGUCGUCCGGCGUGUu -3' miRNA: 3'- -UGUCg-CUCGacu--CGGCAGGCCGCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 2614 | 0.68 | 0.26898 |
Target: 5'- --uGCGccGC--GGCCG-CCGGCGCGCa -3' miRNA: 3'- uguCGCu-CGacUCGGCaGGCCGCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 4124 | 0.68 | 0.26898 |
Target: 5'- cGCGGCGGuacGC-GAGCgGUUCGGgGaCGCg -3' miRNA: 3'- -UGUCGCU---CGaCUCGgCAGGCCgC-GCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 26663 | 0.67 | 0.282617 |
Target: 5'- aACGGCGA-CUGGGUCG-CUGuuGCGCa -3' miRNA: 3'- -UGUCGCUcGACUCGGCaGGCcgCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 14592 | 0.67 | 0.28541 |
Target: 5'- gGCAGCGGgaugcuGCUGAacggagggcagaccuGaCCGUUCGGUGCGa -3' miRNA: 3'- -UGUCGCU------CGACU---------------C-GGCAGGCCGCGCg -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 35138 | 0.69 | 0.203304 |
Target: 5'- cGCGGCGcaGGCcGAGCUugCCGGCauGCGCg -3' miRNA: 3'- -UGUCGC--UCGaCUCGGcaGGCCG--CGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 9713 | 0.69 | 0.198078 |
Target: 5'- uCAGCcAGCcGAcGUCGcggCCGGCGCGCc -3' miRNA: 3'- uGUCGcUCGaCU-CGGCa--GGCCGCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 16853 | 0.7 | 0.192971 |
Target: 5'- cGCugauGCGGGCUGcucGuCCG-CCGGCGCGg -3' miRNA: 3'- -UGu---CGCUCGACu--C-GGCaGGCCGCGCg -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 37073 | 0.66 | 0.358986 |
Target: 5'- aGCGGCGcGCcGAagcuuguuccGCC-UCCGGCGcCGCc -3' miRNA: 3'- -UGUCGCuCGaCU----------CGGcAGGCCGC-GCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 2982 | 0.77 | 0.05764 |
Target: 5'- -gAGCGAGCaggagGAgGCCGaucUCCGGCGCGUg -3' miRNA: 3'- ugUCGCUCGa----CU-CGGC---AGGCCGCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 3215 | 0.73 | 0.106688 |
Target: 5'- -aAGCGcGCUGGccggcGCCGUCCGaGCGCGa -3' miRNA: 3'- ugUCGCuCGACU-----CGGCAGGC-CGCGCg -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 34892 | 0.72 | 0.132802 |
Target: 5'- -gGGCGAGCUcGAG-CGUCCgaGGCGuCGCu -3' miRNA: 3'- ugUCGCUCGA-CUCgGCAGG--CCGC-GCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 27478 | 0.72 | 0.136453 |
Target: 5'- gGCAGCGAGCguaaGAcGCgGUacaCGGuCGCGCu -3' miRNA: 3'- -UGUCGCUCGa---CU-CGgCAg--GCC-GCGCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 34608 | 0.71 | 0.164695 |
Target: 5'- cACGGUGGGCUcaGGGCUGUugucgguggUCGGCGgGCu -3' miRNA: 3'- -UGUCGCUCGA--CUCGGCA---------GGCCGCgCG- -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 27238 | 0.7 | 0.183101 |
Target: 5'- gACGGCGuGCUG-GUCgGUCCGGgGCa- -3' miRNA: 3'- -UGUCGCuCGACuCGG-CAGGCCgCGcg -5' |
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33055 | 5' | -61.6 | NC_007497.1 | + | 27092 | 0.7 | 0.187979 |
Target: 5'- cACGGCGAuCcu-GCCGUCgGGCGuCGCa -3' miRNA: 3'- -UGUCGCUcGacuCGGCAGgCCGC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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