miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33055 5' -61.6 NC_007497.1 + 27102 0.66 0.358985
Target:  5'- gGCAGCgGAGCggauacGGCCG-CCGaUGCGCc -3'
miRNA:   3'- -UGUCG-CUCGac----UCGGCaGGCcGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 34645 0.67 0.275731
Target:  5'- cGCGGUG-GCgcc-UCGUUCGGCGCGCu -3'
miRNA:   3'- -UGUCGCuCGacucGGCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 30020 0.67 0.289638
Target:  5'- gGCAGCGGGUUauucacGCCGaaCCGGCGUucGCa -3'
miRNA:   3'- -UGUCGCUCGAcu----CGGCa-GGCCGCG--CG- -5'
33055 5' -61.6 NC_007497.1 + 15143 0.66 0.326796
Target:  5'- cGCAGCGgaagGGCUcaGGGCauacaUCCaGCGCGCg -3'
miRNA:   3'- -UGUCGC----UCGA--CUCGgc---AGGcCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 26982 0.66 0.326796
Target:  5'- -aAGCGuGUc--GCCGUCCaccgacuucacGGCGCGCg -3'
miRNA:   3'- ugUCGCuCGacuCGGCAGG-----------CCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 40572 0.66 0.334639
Target:  5'- cACGGCGca-UGGaCCGggaauacCCGGCGCGCg -3'
miRNA:   3'- -UGUCGCucgACUcGGCa------GGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 36990 0.66 0.334639
Target:  5'- cCGGCGGcGCcgGAGgCGgaacaagcUUCGGCGCGCc -3'
miRNA:   3'- uGUCGCU-CGa-CUCgGC--------AGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 7333 0.66 0.342618
Target:  5'- cGCAGa-GGCUgguuccGAGCCGgguaCCGGgGUGCa -3'
miRNA:   3'- -UGUCgcUCGA------CUCGGCa---GGCCgCGCG- -5'
33055 5' -61.6 NC_007497.1 + 15978 0.66 0.342618
Target:  5'- uCGGCGAGUUcGAuCuCGaUCCGuGCGCGCc -3'
miRNA:   3'- uGUCGCUCGA-CUcG-GC-AGGC-CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 28098 0.69 0.203303
Target:  5'- uACAGCGAcGUcGucuuGCCGUCaaaGGCGcCGCg -3'
miRNA:   3'- -UGUCGCU-CGaCu---CGGCAGg--CCGC-GCG- -5'
33055 5' -61.6 NC_007497.1 + 23880 0.7 0.192971
Target:  5'- cCGGCGuGaaGcGCUGgCCGGCGCGCa -3'
miRNA:   3'- uGUCGCuCgaCuCGGCaGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 23779 0.7 0.172305
Target:  5'- gGCcGCGAGCUGGuaCGUguggcccuucaggcUCGGCGUGCa -3'
miRNA:   3'- -UGuCGCUCGACUcgGCA--------------GGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 13501 0.76 0.064542
Target:  5'- gACcGCGAuauucgGCUGuucGCCGUCUGGUGCGCg -3'
miRNA:   3'- -UGuCGCU------CGACu--CGGCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 15614 0.76 0.070235
Target:  5'- aACAGCGAGCcGAGCguUUCGaGCGCGCu -3'
miRNA:   3'- -UGUCGCUCGaCUCGgcAGGC-CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 35517 0.74 0.090352
Target:  5'- gACGGUGAGCUu-GCCGUCCucGGCgaGCGCc -3'
miRNA:   3'- -UGUCGCUCGAcuCGGCAGG--CCG--CGCG- -5'
33055 5' -61.6 NC_007497.1 + 42508 0.73 0.112725
Target:  5'- uGCGGaCGAGCUuGGGCC-UCCGGCugcuuuucGCGCc -3'
miRNA:   3'- -UGUC-GCUCGA-CUCGGcAGGCCG--------CGCG- -5'
33055 5' -61.6 NC_007497.1 + 32927 0.71 0.144034
Target:  5'- cCGGCGAGCcaacGuGCCGUCUuuucGCGCGCc -3'
miRNA:   3'- uGUCGCUCGa---CuCGGCAGGc---CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 28006 0.71 0.156128
Target:  5'- uCAGCGAGCUGuGCgCaUUCGGCGUaauGCg -3'
miRNA:   3'- uGUCGCUCGACuCG-GcAGGCCGCG---CG- -5'
33055 5' -61.6 NC_007497.1 + 5367 0.71 0.16036
Target:  5'- gACGaCGAcCUGAcGCguaCGUCCGGCGCGCu -3'
miRNA:   3'- -UGUcGCUcGACU-CG---GCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 7166 0.71 0.164256
Target:  5'- -uGGCGGGCUgGAGCCGagcaacgcgaagaUCaGGUGCGCc -3'
miRNA:   3'- ugUCGCUCGA-CUCGGC-------------AGgCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.