miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33055 5' -61.6 NC_007497.1 + 190 0.77 0.059295
Target:  5'- -gGGuCGAGCUgGAGCCGUCugucgccgCGGUGCGCg -3'
miRNA:   3'- ugUC-GCUCGA-CUCGGCAG--------GCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 475 0.69 0.208648
Target:  5'- -uGGCGcGCUggcaaGAGCagcaGUgCGGCGCGCg -3'
miRNA:   3'- ugUCGCuCGA-----CUCGg---CAgGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 2614 0.68 0.26898
Target:  5'- --uGCGccGC--GGCCG-CCGGCGCGCa -3'
miRNA:   3'- uguCGCu-CGacUCGGCaGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 2982 0.77 0.05764
Target:  5'- -gAGCGAGCaggagGAgGCCGaucUCCGGCGCGUg -3'
miRNA:   3'- ugUCGCUCGa----CU-CGGC---AGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 3215 0.73 0.106688
Target:  5'- -aAGCGcGCUGGccggcGCCGUCCGaGCGCGa -3'
miRNA:   3'- ugUCGCuCGACU-----CGGCAGGC-CGCGCg -5'
33055 5' -61.6 NC_007497.1 + 4124 0.68 0.26898
Target:  5'- cGCGGCGGuacGC-GAGCgGUUCGGgGaCGCg -3'
miRNA:   3'- -UGUCGCU---CGaCUCGgCAGGCCgC-GCG- -5'
33055 5' -61.6 NC_007497.1 + 5367 0.71 0.16036
Target:  5'- gACGaCGAcCUGAcGCguaCGUCCGGCGCGCu -3'
miRNA:   3'- -UGUcGCUcGACU-CG---GCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 7166 0.71 0.164256
Target:  5'- -uGGCGGGCUgGAGCCGagcaacgcgaagaUCaGGUGCGCc -3'
miRNA:   3'- ugUCGCUCGA-CUCGGC-------------AGgCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 7333 0.66 0.342618
Target:  5'- cGCAGa-GGCUgguuccGAGCCGgguaCCGGgGUGCa -3'
miRNA:   3'- -UGUCgcUCGA------CUCGGCa---GGCCgCGCG- -5'
33055 5' -61.6 NC_007497.1 + 8277 0.66 0.334639
Target:  5'- cCAGCGAGgcCUGAGCgaaGUCgCGaucGCGCGUc -3'
miRNA:   3'- uGUCGCUC--GACUCGg--CAG-GC---CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 8694 0.66 0.326796
Target:  5'- -aAGCGGGCgggGcgcgucGGCCGcCCGGuCGUGUg -3'
miRNA:   3'- ugUCGCUCGa--C------UCGGCaGGCC-GCGCG- -5'
33055 5' -61.6 NC_007497.1 + 9713 0.69 0.198078
Target:  5'- uCAGCcAGCcGAcGUCGcggCCGGCGCGCc -3'
miRNA:   3'- uGUCGcUCGaCU-CGGCa--GGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 12884 0.66 0.31909
Target:  5'- uGCAGUuacGGGCUauuuaGAGCCGccgcgCCGGCuugagGCGCc -3'
miRNA:   3'- -UGUCG---CUCGA-----CUCGGCa----GGCCG-----CGCG- -5'
33055 5' -61.6 NC_007497.1 + 13501 0.76 0.064542
Target:  5'- gACcGCGAuauucgGCUGuucGCCGUCUGGUGCGCg -3'
miRNA:   3'- -UGuCGCU------CGACu--CGGCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 14592 0.67 0.28541
Target:  5'- gGCAGCGGgaugcuGCUGAacggagggcagaccuGaCCGUUCGGUGCGa -3'
miRNA:   3'- -UGUCGCU------CGACU---------------C-GGCAGGCCGCGCg -5'
33055 5' -61.6 NC_007497.1 + 15143 0.66 0.326796
Target:  5'- cGCAGCGgaagGGCUcaGGGCauacaUCCaGCGCGCg -3'
miRNA:   3'- -UGUCGC----UCGA--CUCGgc---AGGcCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 15193 0.68 0.237212
Target:  5'- cGCuGCGGuGUUGAGCUucggGUagCGGCGCGCc -3'
miRNA:   3'- -UGuCGCU-CGACUCGG----CAg-GCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 15614 0.76 0.070235
Target:  5'- aACAGCGAGCcGAGCguUUCGaGCGCGCu -3'
miRNA:   3'- -UGUCGCUCGaCUCGgcAGGC-CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 15978 0.66 0.342618
Target:  5'- uCGGCGAGUUcGAuCuCGaUCCGuGCGCGCc -3'
miRNA:   3'- uGUCGCUCGA-CUcG-GC-AGGC-CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 16853 0.7 0.192971
Target:  5'- cGCugauGCGGGCUGcucGuCCG-CCGGCGCGg -3'
miRNA:   3'- -UGu---CGCUCGACu--C-GGCaGGCCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.